On the truncation of long-range electrostatic interactions in DNA. (Q40170586)

From Wikidata

Jump to navigation Jump to search

The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.

scientific article published on September 2000

Language	Label	Description	Also known as
English	On the truncation of long-range electrostatic interactions in DNA.	scientific article published on September 2000

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

On the truncation of long-range electrostatic interactions in DNA. (English)

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

author name string

Norberg J

1

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Nilsson L

2

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

language of work or name

0 references

publication date

1 September 2000

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

79

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

3

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

1537-1553

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Molecular dynamics simulations of human prion protein: importance of correct treatment of electrostatic interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Sodium and chlorine ions as part of the DNA solvation shell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Molecular dynamics simulations of biomolecules: long-range electrostatic effects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Structural equilibrium of DNA represented with different force fields

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Solvent influence on base stacking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Effect of periodic box size on aqueous molecular dynamics simulation of a DNA dodecamer with particle-mesh Ewald method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Internal mobility of the oligonucleotide duplexes d(TCGCG)2 and d(CGCGCG)2 in aqueous solution from molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

On achieving better than 1-A accuracy in a simulation of a large protein: Streptomyces griseus protease A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Treatment of electrostatic effects in macromolecular modeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

Molecular dynamics studies of a DNA‐binding protein: 2. An evaluation of implicit and explicit solvent models for the molecular dynamics simulation of the Escherichia coli trp repressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

22 September 2017

H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

17 June 2018

Potential of mean force calculations of the stacking-unstacking process in single-stranded deoxyribodinucleoside monophosphates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

17 June 2018

The effects of truncating long-range forces on protein dynamics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

17 June 2018

Cutoff size does strongly influence molecular dynamics results on solvated polypeptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

17 June 2018

Taming cut-off induced artifacts in molecular dynamics studies of solvated polypeptides. The reaction field method.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301047

17 June 2018

Simulations of proteins in water

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

13C-NMR relaxation in three DNA oligonucleotide duplexes: model-free analysis of internal and overall motion

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydration

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Dynamic contributions to the DNA binding entropy of the EcoRI and EcoRV restriction endonucleases

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Die Berechnung optischer und elektrostatischer Gitterpotentiale

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Comparison of simple potential functions for simulating liquid water

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Effect of warmup protocol and sampling time on convergence of molecular dynamics simulations of a DNA dodecamer using AMBER 4.1 and particle-mesh Ewald method

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Molecular dynamics simulations of a protein-protein dimer: particle-mesh Ewald electrostatic model yields far superior results to standard cutoff model

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

Molecular dynamics studies of solvated polypeptides: Why the cut-off scheme does not work

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

A smooth particle mesh Ewald method

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976405-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1016/S0006-3495(00)76405-8

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q40170586&oldid=1487185138"