Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human (Q33760663)

29 July 2017

title

Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human (English)

1 reference

29 July 2017

10

Shoshana J Wodak

0 references

John Parkinson

object named as

John Parkinson

9

0 references

Jack Greenblatt

8

object named as

Jack Greenblatt

1 reference

29 July 2017

6

Andrew Emili

1 reference

29 July 2017

3

James Vlasblom

1 reference

29 July 2017

Shuye Pu

1

1 reference

29 July 2017

Andrei L Turinsky

2

1 reference

29 July 2017

Tuan On

4

1 reference

29 July 2017

Xuejian Xiong

5

1 reference

29 July 2017

Zhaolei Zhang

7

1 reference

29 July 2017

language of work or name

English

0 references

publication date

29 November 2010

1 reference

29 July 2017

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29 July 2017

volume

5

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29 July 2017

issue

11

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29 July 2017

page(s)

e14122

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Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

29 November 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Structural and functional analysis of the Crb2-BRCT2 domain reveals distinct roles in checkpoint signaling and DNA damage repair

21 June 2018

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MYSTs mark chromatin for chromosomal functions

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The ARID domain of the H3K4 demethylase RBP2 binds to a DNA CCGCCC motif

21 June 2018

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21 June 2018

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Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Histone variants--the structure behind the function

21 June 2018

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Protein family expansions and biological complexity

21 June 2018

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Choosing negative examples for the prediction of protein-protein interactions

21 June 2018

1 reference

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

21 June 2018

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21 June 2018

1 reference

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Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes

21 June 2018

1 reference

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Tudor, MBT and chromo domains gauge the degree of lysine methylation

21 June 2018

1 reference

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21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Histone demethylation by a family of JmjC domain-containing proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Structure and chromosomal DNA binding of the SWIRM domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The PHD finger, a nuclear protein-interaction domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The SET-domain protein superfamily: protein lysine methyltransferases

21 June 2018

1 reference

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Gotrees: predicting go associations from protein domain composition using decision trees.

21 June 2018

1 reference

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Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The relationship between domain duplication and recombination

21 June 2018

1 reference

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Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

21 June 2018

1 reference

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21 June 2018

1 reference

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Structure, function and evolution of multidomain proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Evolution of the protein repertoire

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The structure of the protein universe and genome evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The human and mouse replication-dependent histone genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Telomere-binding protein TRF2 binds to and stimulates the Werner and Bloom syndrome helicases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Molecular evolution of the actin family.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The Ensembl genome database project

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The SAND domain structure defines a novel DNA-binding fold in transcriptional regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The DNA (cytosine-5) methyltransferases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

A variety of DNA-binding and multimeric proteins contain the histone fold motif.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Mutational analysis of the Sir3 BAH domain reveals multiple points of interaction with nucleosomes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

The Gcn5 bromodomain of the SAGA complex facilitates cooperative and cross-tail acetylation of nucleosomes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2993927

10 December 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/21124763

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Role of the conserved Sir3-BAH domain in nucleosome binding and silent chromatin assembly

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21124763

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SnapShot: chromatin remodeling complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21124763

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0014122

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference