The exchangeability of amino acids in proteins (Q34424971)

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scientific article

Language	Label	Description	Also known as
English	The exchangeability of amino acids in proteins	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

The exchangeability of amino acids in proteins (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Arlin Stoltzfus

object named as

Arlin Stoltzfus

2

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author name string

Lev Y Yampolsky

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

language of work or name

0 references

publication date

8 June 2005

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

number of pages

14

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based on heuristic

inferred from page(s)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

170

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1459-1472

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Different evolutionary constraints on chemotaxis proteins CheW and CheY revealed by heterologous expression studies and protein sequence analysis

1 reference

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HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449787

6 July 2018

Protein structure, neighbor effect, and a new index of amino acid dissimilarities.

1 reference

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Identification of residues critical for metallo-beta-lactamase function by codon randomization and selection

1 reference

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A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

1 reference

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6 July 2018

Estimate of the mutation rate per nucleotide in humans

1 reference

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Identification of two major sites in the type I interleukin-1 receptor cytoplasmic region responsible for coupling to pro-inflammatory signaling pathways

1 reference

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AAindex: amino acid index database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449787

6 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449787

6 July 2018

The Protein Mutant Database

1 reference

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Neighboring-nucleotide effects on the rates of germ-line single-base-pair substitution in human genes

1 reference

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A genetic approach for identifying critical residues in the fingers and palm subdomains of HIV-1 reverse transcriptase

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

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Exploring the allowed sequence space of a membrane protein

1 reference

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Enlarged representative set of protein structures

1 reference

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6 July 2018

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449787

6 July 2018

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

1 reference

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Engineering the stability and function of gene V protein

1 reference

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Saturation mutagenesis of human interleukin-3.

1 reference

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6 July 2018

Aligning amino acid sequences: Comparison of commonly used methods

1 reference

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An improved method of testing for evolutionary homology

1 reference

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6 July 2018

Amino acid difference formula to help explain protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449787

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Kinetic characterization of the recombinant ribonuclease from Bacillus amyloliquefaciens (barnase) and investigation of key residues in catalysis by site-directed mutagenesis

1 reference

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High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis

1 reference

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Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules

1 reference

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6 July 2018

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

1 reference

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Predicting surface exposure of amino acids from protein sequence

1 reference

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Genetic studies of the lac repressor. XIII. Extensive amino acid replacements generated by the use of natural and synthetic nonsense suppressors

1 reference

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Amino acid substitution matrices from an information theoretic perspective

1 reference

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Systematic mutation of bacteriophage T4 lysozyme

1 reference

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Random mutagenesis of protein sequences using oligonucleotide cassettes

1 reference

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Spontaneous mutation in the Escherichia coli lacI gene

1 reference

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Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state.

1 reference

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Amino acid substitution matrices from protein blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449787

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Two types of amino acid substitutions in protein evolution

1 reference

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The evolutionary gain of spliceosomal introns: sequence and phase preferences

1 reference

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Human Gene Mutation Database (HGMD): 2003 update

1 reference

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1 reference

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Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

1 reference

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1 reference

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Models of amino acid substitution and applications to mitochondrial protein evolution.

1 reference

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1 reference

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Contributions of the ionizable amino acids to the stability of staphylococcal nuclease.

1 reference

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Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence.

1 reference

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Amino acid substitution during functionally constrained divergent evolution of protein sequences.

1 reference

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26 Use of nonsense suppression to generate altered proteins

1 reference

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Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

1 reference

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based on heuristic

inferred from PubMed ID database lookup

A new substitution matrix for protein sequence searches based on contact frequencies in protein structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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inferred from PubMed ID database lookup

Performance evaluation of amino acid substitution matrices

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Approaches to predicting effects of single amino acid substitutions on the function of a protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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based on heuristic

inferred from PubMed ID database lookup

Coevolution of the vertebrate integrin alpha- and beta-chain genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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The human gene mutation database

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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inferred from PubMed ID database lookup

Alanine scanning mutagenesis of insulin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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based on heuristic

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A search for single substitutions that eliminate enzymatic function in a bacterial ribonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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Detecting excess radical replacements in phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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based on heuristic

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Complete mutagenesis of the HIV-1 protease

1 reference

https://pubmed.ncbi.nlm.nih.gov/15944362

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1534/GENETICS.104.039107

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

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