Pages that link to "Q33537644"
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The following pages link to Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results (Q33537644):
Displaying 43 items.
- CHARMM: the biomolecular simulation program (Q24658108) (← links)
- Assessing the Current State of Amber Force Field Modifications for DNA (Q27301352) (← links)
- Molecular dynamics of DNA quadruplex molecules containing inosine, 6-thioguanine and 6-thiopurine. (Q28346246) (← links)
- Molecular modeling of nucleic acid structure: energy and sampling (Q28386410) (← links)
- Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers (Q29615408) (← links)
- Nucleic acids: theory and computer simulation, Y2K. (Q30589123) (← links)
- Methods to enable the design of bioactive small molecules targeting RNA. (Q33609375) (← links)
- Re-examination of the intrinsic, dynamic and hydration properties of phosphoramidate DNA. (Q33940985) (← links)
- Development and current status of the CHARMM force field for nucleic acids. (Q34106357) (← links)
- Critical effect of the N2 amino group on structure, dynamics, and elasticity of DNA polypurine tracts (Q34177885) (← links)
- DNA polymorphism: a comparison of force fields for nucleic acids (Q34180532) (← links)
- DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations (Q34183456) (← links)
- Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps (Q34188047) (← links)
- Molecular modeling of drug-DNA complexes: an update (Q34330910) (← links)
- Empirical force fields for biological macromolecules: overview and issues. (Q34334583) (← links)
- Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps (Q34352331) (← links)
- Binding interactions between the core central domain of 16S rRNA and the ribosomal protein S15 determined by molecular dynamics simulations (Q34460049) (← links)
- Theoretical methods for the simulation of nucleic acids. (Q35606425) (← links)
- Mesoscopic modeling for nucleic acid chain dynamics. (Q36248801) (← links)
- Development of CHARMM polarizable force field for nucleic acid bases based on the classical Drude oscillator model (Q38299510) (← links)
- Molecular modeling of nucleic Acid structure: setup and analysis (Q38326721) (← links)
- Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles (Q38389887) (← links)
- Evaluation of DNA Force Fields in Implicit Solvation (Q38848165) (← links)
- Local conformational variations observed in B-DNA crystals do not improve base stacking: computational analysis of base stacking in a d(CATGGGCCCATG)(2) B<-->A intermediate crystal structure (Q39607602) (← links)
- On the truncation of long-range electrostatic interactions in DNA. (Q40170586) (← links)
- On the mechanical analogue of DNA. (Q40401142) (← links)
- Balancing the interactions of ions, water, and DNA in the Drude polarizable force field. (Q40926906) (← links)
- Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium. (Q41476736) (← links)
- All-atom polarizable force field for DNA based on the classical Drude oscillator model (Q41512422) (← links)
- NMR imino proton exchange experiments on duplex DNA primarily monitor the opening of purine bases. (Q41999021) (← links)
- Contribution of the intrinsic mechanical energy of the phosphodiester linkage to the relative stability of the A, BI, and BII forms of duplex DNA. (Q42020296) (← links)
- Molecular dynamics study of the role of the spine of hydration in DNA A-tracts in determining nucleosome occupancy. (Q42360598) (← links)
- Force field parameters for rotation around chi torsion axis in nucleic acids (Q45754349) (← links)
- Polarizable Force Field for DNA Based on the Classical Drude Oscillator: II. Microsecond Molecular Dynamics Simulations of Duplex DNA. (Q48041716) (← links)
- Communication: Quantum polarized fluctuating charge model: a practical method to include ligand polarizability in biomolecular simulations. (Q51466664) (← links)
- Coarse-grained model of nucleic acid bases. (Q51614529) (← links)
- Prediction of atomic structure from sequence for double helical DNA oligomers. (Q51963736) (← links)
- Progress in molecular modelling of DNA materials (Q57423837) (← links)
- Calibrating nucleic acids torsional energetics in force-field: insights from model compounds (Q57901407) (← links)
- Insight into nucleic acid counterion interactions from inside molecular dynamics simulations is “worth its salt” (Q58213235) (← links)
- Modeling DNA deformations (Q73889040) (← links)
- Molecular modeling of nucleic acid structure: setup and analysis (Q81131476) (← links)
- RNA Stability Under Different Combinations of Amber Force Fields and Solvation Models (Q85154292) (← links)