Pages that link to "Q36804416"
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The following pages link to Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution (Q36804416):
Displaying 50 items.
- Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation (Q24555115) (← links)
- The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA (Q24811864) (← links)
- A coarse graining approach to determine nucleic acid structures from small angle neutron scattering profiles in solution (Q24817039) (← links)
- Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structures (Q26997917) (← links)
- Close encounters with DNA (Q26999396) (← links)
- Sequence-dependent variation in DNA minor groove width dictates orientational preference of Hoechst 33258 in A-tract recognition: solution NMR structure of the 2:1 complex with d(CTTTTGCAAAAG)(2) (Q27621005) (← links)
- The structure of a stable intermediate in the A left-right-arrow B DNA helix transition (Q27621551) (← links)
- A crystallographic map of the transition from B-DNA to A-DNA. (Q27632363) (← links)
- Conformations of an adenine bulge in a DNA octamer and its influence on DNA structure from molecular dynamics simulations (Q28367679) (← links)
- New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations (Q29036516) (← links)
- Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers (Q29615408) (← links)
- DNA sequence-dependent deformability deduced from protein-DNA crystal complexes (Q29616629) (← links)
- Comparison between Generalized-Born and Poisson-Boltzmann methods in physics-based scoring functions for protein structure prediction. (Q30351224) (← links)
- Heat conductivity of DNA double helix (Q30406566) (← links)
- An NMR study of d(CTACTGCTTTAG).d(CTAAAGCAGTAG) showing hydration water molecules in the minor groove of a TpA step (Q30559020) (← links)
- Nucleic acids: theory and computer simulation, Y2K. (Q30589123) (← links)
- Bending and adaptability to proteins of the cAMP DNA-responsive element: molecular dynamics contrasted with NMR (Q31796804) (← links)
- Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit water (Q32111367) (← links)
- Solution structure of alpha-conotoxin MI determined by 1H-NMR spectroscopy and molecular dynamics simulation with the explicit solvent water (Q32141984) (← links)
- Molecular-dynamics simulations of pyronine 6G and rhodamine 6G dimers in aqueous solution (Q33244450) (← links)
- BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors (Q33512623) (← links)
- Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results (Q33537644) (← links)
- Consecutive non-natural PZ nucleobase pairs in DNA impact helical structure as seen in 50 μs molecular dynamics simulations (Q33580270) (← links)
- Configurational transitions in Fourier series-represented DNA supercoils (Q33907501) (← links)
- A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation (Q33907726) (← links)
- Observation of an A-DNA to B-DNA transition in a nonhelical nucleic acid hairpin molecule using molecular dynamics (Q33907836) (← links)
- How hormone receptor-DNA binding affects nucleosomal DNA: the role of symmetry (Q33915389) (← links)
- Effect of periodic box size on aqueous molecular dynamics simulation of a DNA dodecamer with particle-mesh Ewald method (Q33915507) (← links)
- Re-examination of the intrinsic, dynamic and hydration properties of phosphoramidate DNA. (Q33940985) (← links)
- Hidden Markov models from molecular dynamics simulations on DNA. (Q34065469) (← links)
- Progressive DNA bending is made possible by gradual changes in the torsion angle of the glycosyl bond. (Q34167723) (← links)
- Structural equilibrium of DNA represented with different force fields (Q34168319) (← links)
- Selective binding of the TATA box-binding protein to the TATA box-containing promoter: analysis of structural and energetic factors (Q34169369) (← links)
- Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment. (Q34172345) (← links)
- Conformational deformability of RNA: a harmonic mode analysis (Q34173086) (← links)
- Molecular dynamics and binding specificity analysis of the bovine immunodeficiency virus BIV Tat-TAR complex (Q34175734) (← links)
- DNA polymorphism: a comparison of force fields for nucleic acids (Q34180532) (← links)
- Simulating structural and thermodynamic properties of carcinogen-damaged DNA. (Q34180745) (← links)
- Stability of the I-motif structure is related to the interactions between phosphodiester backbones (Q34181489) (← links)
- The ABCs of molecular dynamics simulations on B-DNA, circa 2012. (Q34323341) (← links)
- Molecular modeling of drug-DNA complexes: an update (Q34330910) (← links)
- Atomic-level simulations of seeman DNA nanostructures: the paranemic crossover in salt solution (Q34354201) (← links)
- Vibrational dynamics of DNA: IV. Vibrational spectroscopic characteristics of A-, B-, and Z-form DNA's. (Q34620663) (← links)
- Calculated distortions of duplex DNA by a cis, syn cyclobutane thymine dimer are unaffected by a 3' TpA step (Q34627347) (← links)
- Molecular dynamics simulations of double-stranded DNA in an explicit solvent model with the zero-dipole summation method (Q35017031) (← links)
- Blind predictions of DNA and RNA tweezers experiments with force and torque (Q35221131) (← links)
- Theoretical methods for the simulation of nucleic acids. (Q35606425) (← links)
- Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin (Q36280885) (← links)
- A molecular level picture of the stabilization of A-DNA in mixed ethanol-water solutions (Q36571617) (← links)
- Parallelization and improvements of the generalized born model with a simple sWitching function for modern graphics processors (Q36711952) (← links)