Figure: Molecular Phylogenetic analysis of Metulodontia by the Maximum Likelihood method
The evolutionary history was inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model [1]. The tree with the highest log likelihood (-5311.8139) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. Initial tree(s) for the heuristic search were obtained by applying the Neighbor-Joining method to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach. A discrete Gamma distribution was used to model evolutionary rate differences among sites (5 categories (+G, parameter = 0.4787)). The rate variation model allowed for some sites to be evolutionarily invariable ([+I], 56.3336% sites). The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The analysis involved 17 nucleotide sequences. All positions with less than 95% site coverage were eliminated. That is, fewer than 5% alignment gaps, missing data, and ambiguous bases were allowed at any position. There were a total of 1379 positions in the final dataset. Evolutionary analyses were conducted in MEGA6 [2]
1. Kimura M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
2. Tamura K., Stecher G., Peterson D., Filipski A., and Kumar S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution30: 2725-2729.
The person who associated a work with this deed has dedicated the work to the public domain by waiving all of their rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission.
http://creativecommons.org/publicdomain/zero/1.0/deed.enCC0Creative Commons Zero, Public Domain Dedicationfalsefalse
Captions
Add a one-line explanation of what this file represents
copyrighted, dedicated to the public domain by copyright holder<\/a>"}},"text\/plain":{"en":{"P6216":"copyrighted, dedicated to the public domain by copyright holder"}}}}" class="wbmi-entityview-statementsGroup wbmi-entityview-statementsGroup-P6216 oo-ui-layout oo-ui-panelLayout oo-ui-panelLayout-framed">
original creation by uploader<\/a>"}},"text\/plain":{"en":{"P7482":"original creation by uploader"}}}}" class="wbmi-entityview-statementsGroup wbmi-entityview-statementsGroup-P7482 oo-ui-layout oo-ui-panelLayout oo-ui-panelLayout-framed">
{{Information |Description= '''Figure: Molecular Phylogenetic analysis of ''Metulodontia'' by the Maximum Likelihood method'''<br/> The evolutionary history was inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model [1]....
File usage
The following pages on the English Wikipedia use this file (pages on other projects are not listed):