# ===========================================================================

#

# PUBLIC DOMAIN NOTICE

# National Center for Biotechnology Information

#

# This software/database is a "United States Government Work" under the

# terms of the United States Copyright Act. It was written as part of

# the author's official duties as a United States Government employee and

# thus cannot be copyrighted. This software/database is freely available

# to the public for use. The National Library of Medicine and the U.S.

# Government have not placed any restriction on its use or reproduction.

#

# Although all reasonable efforts have been taken to ensure the accuracy

# and reliability of the software and data, the NLM and the U.S.

# Government do not and cannot warrant the performance or results that

# may be obtained by using this software or data. The NLM and the U.S.

# Government disclaim all warranties, express or implied, including

# warranties of performance, merchantability or fitness for any particular

# purpose.

#

# Please cite the author in any work or product based on this material.

#

# ===========================================================================

# determine shell environment

include $(TOP)/build/Makefile.shell

# load build configuration

include $(CONFIG_FILE)

# load platform-specific settings

include $(TOP)/build/Makefile.$(OS)

#-------------------------------------------------------------------------------

# install

#

# TOOLS_TO_COPY, TOOLS_TO_SYMLINK

# $TOOLS_TO_INSTALL = TOOLS_TO_COPY + TOOLS_TO_SYMLINK

include $(TOP)/build/Makefile.tools

ifeq (1,$(HAVE_HDF5))

TOOLS_TO_COPY += pacbio-load

TOOLS_TO_COPY += pacbio-loadxml

endif

# unset outside defined variables

ROOT =

LINUX_ROOT =

#fake root for debugging

#uncomment this line and change the test for root ( see under install: ) to succeed:

#ROOT = ~/root

ifeq (linux, $(OS))

ifeq (0, $(shell id -u))

LINUX_ROOT = true

endif

endif

ifeq (true, $(LINUX_ROOT))

KONFIG_DIR = $(ROOT)/etc/ncbi

PROFILE_FILE = $(ROOT)/etc/profile.d/ncbi-vdb

else

KONFIG_DIR = $(INST_BINDIR)/ncbi

endif

EXE_TARGET = $(INST_BINDIR)

PROFILE_FILE = $(ROOT)/etc/profile.d/sra-tools

installexes:

@ echo "Installing executables to $(INST_BINDIR)/..."

@ mkdir -p $(INST_BINDIR)

@ $(MAKE) -s --no-print-directory -f $(TOP)/build/Makefile.install $(TOOLS_TO_INSTALL)

@ #

@ printf "Installing magic file..."

@ $(COPY) $(TOP)/tools/copycat/magic $(INST_BINDIR) && echo "done"

$(TOOLS_TO_COPY):

@ printf "Installing $@..."

@ # report missing tools

@ ( test -f $(BINDIR)/$@$(EXEX) || ( echo "not found" && false ) ) && \

$(COPY) $(BINDIR)/$@$(EXEX) $(BINDIR)/$@$(VERSION_EXEX) $(BINDIR)/$@$(MAJVERS_EXEX) $(INST_BINDIR) && \

echo "done"

$(TOOLS_TO_COPY_OPTIONAL):

@ printf "Installing $@..."

@ # ignore missing tools

@ - ( test -f $(BINDIR)/$@$(EXEX) || ( echo "not found" && false ) ) && \

$(COPY) $(BINDIR)/$@$(EXEX) $(BINDIR)/$@$(VERSION_EXEX) $(BINDIR)/$@$(MAJVERS_EXEX) $(INST_BINDIR) && \

echo "done"

$(TOOLS_TO_SYMLINK):

@ printf "Installing symlink for $@..."

@ # report missing tools

@ ( test -f $(BINDIR)/$@$(EXEX) || ( echo "not found" && false ) ) && \

$(COPY) $(BINDIR)/$@$(VERSION_EXEX) $(INST_BINDIR)/$@-orig$(VERSION_EXEX) && \

ln -f -s sratools$(VERSION_EXEX) $(INST_BINDIR)/$@$(VERSION_EXEX) && \

ln -f -s $@$(VERSION_EXEX) $(INST_BINDIR)/$@$(MAJVERS_EXEX) && \

ln -f -s $@$(MAJVERS_EXEX) $(INST_BINDIR)/$@$(EXEX) && \

echo "done"

copykfg:

@ echo "Installing configuration files to $(KONFIG_DIR)"

@ $(TOP)/build/install-kfg.sh default.kfg $(BINDIR)/ncbi $(KONFIG_DIR) $(TOP)/shared/kfgsums

@ $(TOP)/build/install-kfg.sh certs.kfg $(BINDIR)/ncbi $(KONFIG_DIR) $(TOP)/shared/kfgsums

@ $(TOP)/build/install-kfg.sh vdb-copy.kfg $(TOP)/tools/vdb-copy $(KONFIG_DIR) $(TOP)/shared/kfgsums

@ # rename obsolete ncbi-vdb.kfg

@ if [ -f $(KONFIG_DIR)/ncbi-vdb.kfg ] ; \

then mv -v $(KONFIG_DIR)/ncbi-vdb.kfg $(KONFIG_DIR)/ncbi-vdb.kfg.orig ; fi

DELITE = \

kar+ \

kar+meta \

make-read-filter

$(DELITE):

@ printf "Installing $@..."

@ # ignore missing tools

@ - ( test -f $(BINDIR)/$@$(EXEX) || ( echo "not found" && false ) ) && \

$(COPY) $(BINDIR)/$@$(EXEX) $(BINDIR)/$@$(VERSION_EXEX) $(BINDIR)/$@$(MAJVERS_EXEX) $(INST_BINDIR) && \

echo "done"

install-delite: $(DELITE)

install: installexes copykfg

ifeq (true, $(LINUX_ROOT))

@ echo "Updating $(PROFILE_FILE).[c]sh"

@ printf \

"#version $(VERSION)\n"\

"if ! echo \$$PATH | /bin/grep -q $(EXE_TARGET)\n"\

"then export PATH=$(EXE_TARGET):\$$PATH\n"\

"fi" \

>$(PROFILE_FILE).sh && chmod 644 $(PROFILE_FILE).sh || true;

@ printf \

"#version $(VERSION)\n"\

"echo \$$PATH | /bin/grep -q $(EXE_TARGET)\n"\

"if ( \$$status ) setenv PATH $(EXE_TARGET):\$$PATH\n"\

>$(PROFILE_FILE).csh && chmod 644 $(PROFILE_FILE).csh || true;

@ #TODO: check version of the files above

endif

#-------------------------------------------------------------------------------

# uninstall

#

TO_UNINSTALL = $(addsuffix *,$(addprefix $(INST_BINDIR)/,$(TOOLS_TO_INSTALL) \

magic ))

ifneq (true, $(LINUX_ROOT))

TO_UNINSTALL += $(INST_BINDIR)/ncbi/certs.kfg $(INST_BINDIR)/ncbi/ncbi-vdb.kfg $(INST_BINDIR)/ncbi/default.kfg $(INST_BINDIR)/ncbi/vdb-copy.kfg

endif

TO_UNINSTALL_AS_ROOT = $(ROOT)/etc/ncbi/certs.kfg $(ROOT)/etc/ncbi/default.kfg $(ROOT)/etc/ncbi/vdb-copy.kfg $(PROFILE_FILE).sh $(PROFILE_FILE).csh

uninstall:

@ echo "Uninstalling sra-tools from $(INST_BINDIR)..."

rm -rf $(TO_UNINSTALL)

ifeq (true, $(LINUX_ROOT))

@ echo "Uninstalling $(TO_UNINSTALL_AS_ROOT) ..."

@ rm -rf $(TO_UNINSTALL_AS_ROOT)

endif

@ echo "done."

.PHONY: install installexes uninstall install-delite