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28 Open 105 Closed
28 Open 105 Closed
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Issues list

--no-recruit option question
#164 opened Oct 22, 2024 by AstrobioMike
2
Is recombination filtering already done by default （Version 2.06）?
#163 opened Oct 15, 2024 by Arthurdyu
2
Index error if file is empty
#157 opened Jul 26, 2024 by mlarjim
4
Issues with conda installation: incompatibilities between python versions of fastani and pyspoa?
#156 opened Jul 11, 2024 by thierrygrange
2
gziped files
#155 opened Jul 3, 2024 by jsgounot
No SNPs left after intersection of partitions (--min-partition-size option)
#153 opened Jun 23, 2024 by doy-pin
1
VCF file does not contain indel information
#137 opened Jan 3, 2024 by Archaea810
1
Feature Request: use pre-computed alignment
#130 opened Aug 22, 2023 by chrisgulvik
1
Creating empty mblocks file
#124 opened Apr 20, 2023 by lkavan2
6
parsnp adding SNP and different SNP calls between runs
#112 opened Apr 28, 2022 by robfenton
2
Time for converting from .ggr to <multi-fasta alignment output (concatenated LCBs)>
#105 opened Feb 1, 2022 by valery-shap
1
Different number of SNPs from same data when ParSNP run on different computers
#99 opened Dec 14, 2021 by SarahNadeau
6
issue with parsnp/1.5.4
#91 opened Mar 11, 2021 by lanorvege
3
Error command harvest failed
#89 opened Dec 23, 2020 by valeriaR89
7
Failing at raxml step
#88 opened Dec 10, 2020 by BioMinnie
7
Parsnp memory issue
#82 opened Aug 4, 2020 by bkille
1
Not able to detect the target genomes to run
#79 opened Jun 16, 2020 by Nits11
12
Number of core-genome SNPs and difference between two islalates in a clade question
#70 opened Mar 3, 2020 by Galib009
Recombination filtering and default parameters question
#66 opened Dec 16, 2019 by nickp60
Different outputs depending on the file under review
#65 opened Nov 8, 2019 by cfsancas
2
parsnp run error due to readlinelib installation
#61 opened Jun 18, 2019 by alexadn
2
autogen.sh error: two- and three-arguments forms are deprecated bug installation
#56 opened Sep 8, 2018 by tseemann
@Fu-Yilei
3
parsnp now in brewsci/bio packaging system enhancement
#53 opened Aug 11, 2018 by tseemann
1
parsnp tree node labels question
#50 opened Jun 15, 2018 by nataliesilmon
Freebayes implementation missing? Feature request question
#47 opened May 17, 2018 by sconlan
1
ProTip! Exclude everything labeled bug with -label:bug.