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Oregon Health and Science University Computational Biology

16 followers
Portland, OR
http://www.ohsu.edu/compbio

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funnel funnel Public

Funnel is a toolkit for distributed task execution via a simple, standard API.

Go 121 32
tesseract tesseract Public

Python lib for remote code execution via the GA4GH TES API

Python 6
g2p-aggregator g2p-aggregator Public

Associations of genomic features, drugs and diseases

HTML 48 11

Repositories

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Showing 10 of 199 repositories

vrs_anvil_toolkit Public
Extract clinical variant interpretations from VCF using GA4GH VRS IDs

ohsu-comp-bio/vrs_anvil_toolkit’s past year of commit activity

Jupyter Notebook 2 MIT 0 14 (1 issue needs help) 1 Updated Nov 14, 2024
funnel Public
Funnel is a toolkit for distributed task execution via a simple, standard API.

ohsu-comp-bio/funnel’s past year of commit activity

Go 121 MIT 32 106 (1 issue needs help) 3 Updated Nov 14, 2024
compbio-galaxy-wrappers Public
OHSU Galaxy wrappers.

ohsu-comp-bio/compbio-galaxy-wrappers’s past year of commit activity

Python 6 11 0 1 Updated Nov 11, 2024
helm-charts Public
Helm Charts for deploying various projects in Kubernetes!

ohsu-comp-bio/helm-charts’s past year of commit activity

0 0 0 0 Updated Nov 6, 2024
seqrepo-rest-service Public Forked from biocommons/seqrepo-rest-service
OpenAPI-based REST interface to biological sequences and sequence metadata

ohsu-comp-bio/seqrepo-rest-service’s past year of commit activity

Python 0 Apache-2.0 6 0 0 Updated Nov 6, 2024
py-tes Public
Python SDK for the GA4GH Task Execution API

ohsu-comp-bio/py-tes’s past year of commit activity

Python 5 MIT 10 17 2 Updated Nov 5, 2024
vrs-annotator Public
Annotates VCF Variants with VRS IDs

ohsu-comp-bio/vrs-annotator’s past year of commit activity

Jupyter Notebook 1 3 0 1 Updated Nov 1, 2024
fence-multipart Public Forked from uc-cdis/fence
AuthN/AuthZ OIDC Service

ohsu-comp-bio/fence-multipart’s past year of commit activity

Python 0 Apache-2.0 48 0 0 Updated Oct 30, 2024
syntheVAEiser Public

ohsu-comp-bio/syntheVAEiser’s past year of commit activity

Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Oct 18, 2024
.github Public

ohsu-comp-bio/.github’s past year of commit activity

0 0 0 0 Updated Oct 14, 2024

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