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a genome annotator based on the protein annnotations functions to analyze and annotate your genome using the protein annotations.
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it provides all the analysis done on the basis of the protein anntoations to the genome.
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provide the reference proteins and the assembled genome and it will provide.
- generatemRNA
generatemRNA("/home/gaurav/Desktop/final_code_push/multi.gff", "/home/gaurav/Desktop/final_code_push/multi.fasta", "/home/gaurav/Desktop/final_code_push/multiout.fasta")
- generateCDS
generateCDS("/home/gaurav/Desktop/final_code_push/multi.gff", "/home/gaurav/Desktop/final_code_push/multi.fasta", "/home/gaurav/Desktop/final_code_push/multiout.fasta")
- plotCDS
plotCDS("/home/gaurav/Desktop/final_code_push/multi.gff", "/home/gaurav/Desktop/final_code_push/multi.txt")
- plotmRNA
plotmRNAs("/home/gaurav/Desktop/final_code_push/multi.gff", "/home/gaurav/Desktop/final_code_push/multi.txt")
- extractintergenic
generateintergenic("/home/gaurav/Desktop/final_code_push/multi.gff", "/home/gaurav/Desktop/final_code_push/multi.fasta", "/home/gaurav/Desktop/final_code_push/final.fasta")
- generatemRNA
$ pip install protein_annotator
Interested in contributing? Check out the contributing guidelines. Please note that this project is released with a Code of Conduct. By contributing to this project, you agree to abide by its terms.
protein_annotator
was created by Gaurav Sablok. It is licensed under the terms of the MIT license. \
Gaurav
Academic Staff Member
Bioinformatics
Institute for Biochemistry and Biology
University of Potsdam
Potsdam,Germany
protein_annotator
was created with cookiecutter
and the py-pkgs-cookiecutter
template.