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Should we pass Omni to BQSR? #1049

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jasonwalker80 opened this issue Oct 15, 2021 · 0 comments
Open

Should we pass Omni to BQSR? #1049

jasonwalker80 opened this issue Oct 15, 2021 · 0 comments

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@jasonwalker80
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BQSR should not need the omni VCF. The omni VCF is a list of sites used by verifyBamId for identifying contamination (really mixing of multiple samples).

analysis-workflows/example_data/somatic_exome.yaml

Line 50 in 43c790e

- path: somatic_inputs/hla_and_brca_genes_omni.vcf.gz

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