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@geneontology

The Gene Ontology Consortium

README.md

Welcome to the geneontology GitHub organization!

The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research. For more information, please see our website, http://geneontology.org/.

Overview of some of the key repositories in this organization:

  • geneontology.github.io - GO documentation
  • go-ontology - Source ontology files for the Gene Ontology. This is primarily for the developers of the GO and contains the source code for the GO ontology. To download ontology files, please use the Downloads menu on our website.
  • go-annotation - Issues about GO annotations (manual & automated)
  • go-site - Metadata, tools, and files associated with the Gene Ontology website
  • noctua - Graph-based modeling / editing tools for biology
  • helpdesk - A place for the GO community to ask for help or report issues.

Getting help

If you have general questions about GO, check our Frequently Asked Questions.

If you have a specific question about GO, its data, usage, software, or services, please create a ticket in our discussion tracker.

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  1. helpdesk helpdesk Public

    The Gene Ontology Helpdesk

    16 6

  2. go-announcements go-announcements Public

    Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.

    14 1

  3. geneontology.github.io geneontology.github.io Public

    Repository for storing GO documentation, directly available through the general GO site

    SCSS 6 10

  4. go-ontology go-ontology Public

    Source ontology files for the Gene Ontology

    Makefile 223 40

  5. go-annotation go-annotation Public

    This repository hosts the tracker for issues pertaining to GO annotations.

    Python 34 10

  6. go-site go-site Public

    A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

    JavaScript 46 89

Repositories

Showing 10 of 122 repositories
  • go-annotation Public

    This repository hosts the tracker for issues pertaining to GO annotations.

    geneontology/go-annotation’s past year of commit activity
    Python 34 BSD-3-Clause 10 352 2 Updated Nov 5, 2024
  • go-ontology Public

    Source ontology files for the Gene Ontology

    geneontology/go-ontology’s past year of commit activity
    Makefile 223 CC-BY-4.0 40 739 47 Updated Nov 5, 2024
  • noctua-models Public

    This is the data repository for the models created and edited with the Noctua tool stack for GO.

    geneontology/noctua-models’s past year of commit activity
    Makefile 10 CC-BY-4.0 3 35 (1 issue needs help) 2 Updated Nov 5, 2024
  • reactome-go-cams Public

    A set of GO-CAMs built automatically from Reactome pathways.

    geneontology/reactome-go-cams’s past year of commit activity
    1 0 2 1 Updated Nov 5, 2024
  • pathways2GO Public

    Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

    geneontology/pathways2GO’s past year of commit activity
    Java 8 0 100 0 Updated Nov 5, 2024
  • go-fastapi Public
    geneontology/go-fastapi’s past year of commit activity
    Python 6 3 5 2 Updated Nov 5, 2024
  • noctua_app_stack Public
    geneontology/noctua_app_stack’s past year of commit activity
    HCL 0 1 5 0 Updated Nov 4, 2024
  • noctua-standard-annotations Public
    geneontology/noctua-standard-annotations’s past year of commit activity
    TypeScript 0 0 17 0 Updated Nov 4, 2024
  • gocam-py Public

    Draft data model for GO-CAMs

    geneontology/gocam-py’s past year of commit activity
    Python 0 BSD-3-Clause 0 3 1 Updated Nov 4, 2024
  • geneontology.github.io Public

    Repository for storing GO documentation, directly available through the general GO site

    geneontology/geneontology.github.io’s past year of commit activity
    SCSS 6 MIT 10 25 10 Updated Nov 4, 2024
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