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syntenet Public
Forked from almeidasilvaf/syntenetAn R package to infer and analyze synteny networks from protein sequences
R UpdatedNov 24, 2022 -
shiny_popgen Public
Forked from silastittes/shiny_popgenShiny apps for teaching Population Genetics
R MIT License UpdatedJul 14, 2021 -
course-linux-command-line-bash-scripting-metacentrum Public
Forked from V-Z/course-linux-command-line-bash-scripting-metacentrumDon’t be afraid of command line! It is friendly and powerful tool allowing to process large data and automate tasks. Practically identical is command line also in Apple osX, BSD and another UNIX-ba…
TeX Other UpdatedMar 17, 2021 -
FastqSifter Public
Forked from josephryan/FastqSifterSeparate contaminating reads from FASTQ files (e.g., mitochondria, symbionts, bacterial or human contaminants)
Perl GNU General Public License v3.0 UpdatedMar 12, 2021 -
cgat-apps Public
Forked from cgat-developers/cgat-appscgat-apps repository
Python Other UpdatedMar 11, 2021 -
structure-multi-pbspro Public
Forked from V-Z/structure-multi-pbsproSet of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
Shell GNU General Public License v3.0 UpdatedMar 2, 2021 -
ASTRID Public
Forked from pranjalv123/ASTRIDFast, accurate species tree estimation.
C++ GNU General Public License v2.0 UpdatedMar 2, 2021 -
EasyParallel Public
Forked from hzz0024/EasyParallelPython GNU General Public License v3.0 UpdatedFeb 10, 2021 -
Tree2gd Public
Forked from Dee-chen/Tree2gdPep8 GNU General Public License v3.0 UpdatedJan 28, 2021 -
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pyscript-bio Public
Forked from flystar233/pyscript-bio生物信息学python代码,专注于重测序文本计算、处理
Python UpdatedJan 21, 2021 -
rna-seq-star-deseq2 Public template
Forked from snakemake-workflows/rna-seq-star-deseq2RNA-seq workflow using STAR and DESeq2
Python MIT License UpdatedJan 14, 2021 -
tutorials Public
Forked from mmatschiner/tutorialsTutorials on phylogenetic and phylogenomic inference
HTML UpdatedJan 5, 2021 -
plotHicGenome Public
Forked from Atvar2/plotHicGenomeThe tools are used for displaying hic signal of genome
Python GNU General Public License v3.0 UpdatedJan 4, 2021 -
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genomics_general Public
Forked from simonhmartin/genomics_generalGeneral tools for genomic analyses.
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AliTV Public
Forked from AliTVTeam/AliTVVisualize whole genome alignments as linear maps
HTML MIT License UpdatedDec 17, 2020 -
ENMwizard Public
Forked from HemingNM/ENMwizardAdvanced Techniques for Ecological Niche Modeling Made Easy
R UpdatedDec 11, 2020 -
rad-seq-stacks Public
Forked from snakemake-workflows/rad-seq-stacksPython MIT License UpdatedDec 1, 2020 -
Maxent Public
Forked from mrmaxent/MaxentMaximum entropy modelling of species geographic distributions.
Java MIT License UpdatedNov 24, 2020 -
Flye Public
Forked from mikolmogorov/FlyeDe novo assembler for single molecule sequencing reads using repeat graphs
C++ Other UpdatedNov 3, 2020 -
reconstruct_mito_genome Public
Forked from ban-m/reconstruct_mito_genomeFull *dis* assembler for plant mitochondrial genomes
Rust UpdatedNov 2, 2020 -
shearwater_phylogenomics Public
Forked from jferrerobiol/shearwater_phylogenomicsUpdatedOct 24, 2020 -
DiscoSnp Public
Forked from GATB/DiscoSnpDiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
Python GNU Affero General Public License v3.0 UpdatedOct 23, 2020 -
blobtools Public
Forked from DRL/blobtoolsModular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
Python GNU General Public License v3.0 UpdatedOct 22, 2020 -
Coilia_nasus_parallel_evolution Public
Forked from lyl8086/Coilia_nasus_parallel_evolutionScripts used in parallel evolution analysis of Coilia nasus
Perl GNU General Public License v2.0 UpdatedOct 21, 2020 -
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dDocent Public
Forked from jpuritz/dDocenta bash pipeline for RAD sequencing
Shell MIT License UpdatedOct 12, 2020 -
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Assembly Public
Forked from abmudd/AssemblyPipelines and scripts related to genome assembly, annotation, and analysis
Python UpdatedSep 18, 2020