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@rsinghlab

Singh Lab @ Brown

Repository for projects developed in the lab

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  1. pyaging pyaging Public

    A Python-based compendium of GPU-optimized aging clocks.

    Jupyter Notebook 80 3

  2. MADDi MADDi Public

    This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).

    Jupyter Notebook 78 15

  3. SCOT SCOT Public

    Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

    Jupyter Notebook 67 17

  4. AltumAge AltumAge Public

    Jupyter Notebook 30 9

  5. GNN-Tumor-Seg GNN-Tumor-Seg Public

    Using Graph Neural Networks to Segment MRIs of Brain Tumors

    Python 18 4

  6. scNODE scNODE Public

    scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

    Jupyter Notebook 17 2

Repositories

Showing 10 of 22 repositories
  • scMultiNODE Public

    scMultiNODE: Temporal Single-Cell Data Integration across Unaligned Modalities

    rsinghlab/scMultiNODE’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 1, 2024
  • QZERO Public

    Retrieval Augmented Zero-Shot Text Classification

    rsinghlab/QZERO’s past year of commit activity
    Python 3 0 0 0 Updated Nov 1, 2024
  • rsinghlab/ML_epigenetic_features_glioblastoma’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Oct 20, 2024
  • scNODE Public

    scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

    rsinghlab/scNODE’s past year of commit activity
    Jupyter Notebook 17 MIT 2 2 0 Updated Oct 11, 2024
  • OvO Public
    rsinghlab/OvO’s past year of commit activity
    Jupyter Notebook 6 MIT 0 0 0 Updated Sep 30, 2024
  • HistoneClocks Public

    This repository contains the code and data to reproduce the results of our paper entitled "Histone mark age of human tissues and cells".

    rsinghlab/HistoneClocks’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Sep 14, 2024
  • GC-MERGE Public

    This is the repository for the long-range interaction GCNN for predicting gene expression for the Singh Lab.

    rsinghlab/GC-MERGE’s past year of commit activity
    Python 5 MIT 1 3 0 Updated Sep 11, 2024
  • scGrapHiC Public

    A graph deconvolution approach to predict Hi-C contact map from pseudo-bulk scRNA-seq.

    rsinghlab/scGrapHiC’s past year of commit activity
    Python 5 0 1 0 Updated Aug 24, 2024
  • pyaging Public

    A Python-based compendium of GPU-optimized aging clocks.

    rsinghlab/pyaging’s past year of commit activity
    Jupyter Notebook 80 BSD-3-Clause 3 1 0 Updated Aug 12, 2024
  • AltumAge Public
    rsinghlab/AltumAge’s past year of commit activity
    Jupyter Notebook 30 BSD-3-Clause 9 2 0 Updated Aug 3, 2024

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