Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
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Updated
Sep 26, 2024 - Python
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Python library to facilitate genome assembly, annotation, and comparative genomics
A grammar of graphics for comparative genomics
An analysis and visualization platform for 'omics data
Eukaryotic Genome Annotation Pipeline
Chromosome visualization for the web
A genome visualization python package for comparative genomics
Build a partitioned pangenome graph from microbial genomes
HyPhy: Hypothesis testing using Phylogenies
A fast whole-genome aligner based on de Bruijn graphs
Genome wide orthology inference and dNdS estimation
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
A tool for drawing ANI clustermap between all-vs-all microbial genomes
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
Guided synteny alignment between duplicated genomes (within specified quota constraint)
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
The Ensembl Compara Perl API and SQL schema
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
CoGe (Comparative Genomics) Platform
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