OX COI Messenger - a Flutter app for the COI (Chat Over IMAP) standard

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.

MalariaGEN Plasmodium falciparum Community Project analysis using coiaf

This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904

Waste Management for Captain of Industry game

ČOI adblock list

Complexity of Infection Estimation with Allele Frequencies

Unpowered Balancers for Captain of Industry game

NuclearPlus mod for CoI

Captain of Industry mod.

PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines

Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."

A set of Xcode file templates to use when developing on OX Coi

Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes

This is the repository for the PAP-DPB2 Phylogenetic analysis project.

A python script that makes it easy to analyze multiple COIs (Communities of Interest) and generate heat maps and metrics of interest.

COI sequences files used to test the COI Classifier Web Portal

Back up for the review and scripts used in the article "The evolutionary outcomes of climate-change-induced hybridization in insect populations." published in COIS,

This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).