Official git repository for Biopython (originally converted from CVS)
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Updated
Sep 11, 2024 - Python
Official git repository for Biopython (originally converted from CVS)
Data intensive science for everyone.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official code repository for GATK versions 4 and up
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
A powerful open source data warehouse system
A comprehensive tutorial about GWAS and PRS
A collaboratively written review paper on deep learning, genomics, and precision medicine
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Python library to handle Gene Ontology (GO) terms
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
tools for working with genome variation graphs
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