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A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.…

  • Updated Jul 7, 2021
  • Jupyter Notebook

PVDP is an open source tool for the identification of plant viruses in RNA-seq data. This project was funded by Fondo de Ciencia, Tecnología e Innovación del Sistema General de Regalías del Departamento de Antioquia under grant 1101-805-62787 (Convenio No. 4600007658-779) and executed with the participation of Universidad Nacional de Colombia se…

  • Updated Jun 3, 2022

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