The COWAS (co-expression-wide association study) method identifies pairs of co-expressed proteins that are associated with disease.

A workflow based on QTLtools to run cis- and trans-QTL analyses.

Rapid standardisation and quality control of GWAS or QTL summary statistics

In-silico methods for finemapping of genetic regions in inbred mice

Kernelized HAplotype-based MIXed model association mapping (KHAMIX)

A molecular Mendelian Randomization tool

Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

This is the public repository for information related to the thesis chapter of the same name as the title.

A workflow based on QTLtools and tensorQTL to run cis- and trans-QTL analyses (SLURM based).

A comprehensive QTL analysis tool by multivariate linear mixed model.

Linked Data Platform for Plant Breeding & Genomics

echoverse module: Example data.

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

Scripts of Final Master Project

Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest

Create LocusZoom-style plots in R.

Scripts for various molecular quantitative trait locus (xQTL) analysis.