🔬📚 Galaxy Tool wrappers
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Updated
Oct 27, 2024 - HTML
🔬📚 Galaxy Tool wrappers
A course on genomics and bioinformatics from WU
Galaxy RNA workbench
These Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers. These algorithms include more than 120 open-source implementations that describe many known or novel algorithms in Bioinformatics.
A python package storing different tools for different NGS operations
An application for analysis of 5′ endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5′ monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.The main workflow of fivepseq is intended for downstream analysis of alignment fi…
This JavaScript implementation detects the areas where two RNA sequences are complementary to each other. All symbols from UTF-8 are accepted by this algorithm.
Jupiter Bioinformatics (V1) - To find similarities between two words, a manual comparison is required. For words between 4 and 8 letters, such a task can be performed by any of us without the use of a computer. However, what if the objects of comparison are entire phrases/sequences/files?
Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
An OCaml package for predicting RNA secondary structure
BRIO: a web server for RNA sequence and structure motif scan (https://doi.org/10.1093/nar/gkab400)
Sequence Logos based on maximum values is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.
This JavaScript implementation detects the areas where two DNA sequences are complementary to each other. All symbols from UTF-8 are accepted by this algorithm.
This is a high discrimination scanner designed to recognise DNA motifs within a long stretch of DNA. Most importantly, this implementation shows how to implement a variable sensitivity for detection, by modifying the pseudocount values.
Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
These Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers. These algorithms include more than 120 open-source implementations.
Self-sequence alignment represents a novel mathematical model for measuring the information content in biological sequences, such as DNA, RNA, or proteins. Nevertheless, the use of this model is not limited to biological sequences. Thus, any symbol inside a sequence can be considered.
These All-in-one Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers.
This implementation is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
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