No sorry, when apply the palette it applies to all the canvas.
Is there any way to set it to a different color other than #ffffff?
Import your image with a different background color first with the desired one for example.
That makes a lot of sense, sometimes we overlook the easiest solutions. Thanks man. Great program!
It's a real shame about the transparent background being lost during the palette conversion as this makes the PixaTool workflow just unusable for my game development. Oh well.