Motivation Widespread interest in the study of the microbiome has resulted in data
proliferation and the development of powerful computational tools. However, many scientific …

ORBKIT is a toolbox for postprocessing electronic structure calculations based on a highly
modular and portable Python architecture. The program allows computing a multitude of …

Rapid development of high-throughput sequencing (HTS) techniques has led biology into the
“big-data” era. Data analysis using various bioinformatics softwares or pipelines relying on …

This technical report accompanies a research article that empirically studies the problems
related to inter-repository package dependencies in the R ecosystem of statistical computing, …

Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes
methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, …

We present InternLM, a multilingual foundational language model with 104B parameters.
InternLM is pre-trained on a large corpora with 1.6 T tokens with a multi-phase progressive …

… In particular, some of its features directly come from the Why/Why3 platforms for deductive
program verification (also developed at Université Paris-Sud) which provide a rich …

Background Reactome aims to provide bioinformatics tools for visualisation, interpretation
and analysis of pathway knowledge to support basic research, genome analysis, modelling, …

This tutorial is an introduction to OpenTripPlanner (OTP)-an open-source and cross-platform
multimodal route planner written in JAVA. It uses imported Open Street Map (OSM) data for …

… idea of knowledge distillation is to transfer the knowledge of a computationally expensive
teacher model to a light student model, and thus the student model is able to fit in platforms …