Incorporating nucleosomes into thermodynamic models of transcription regulation (Q41909104)

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scientific article published on 18 May 2009

Language	Label	Description	Also known as
English	Incorporating nucleosomes into thermodynamic models of transcription regulation	scientific article published on 18 May 2009

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Incorporating nucleosomes into thermodynamic models of transcription regulation (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

3

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

author name string

Tali Raveh-Sadka

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Michal Levo

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

publication date

18 May 2009

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Genome Research

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

19

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

8

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

1480-1496

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

The DNA-encoded nucleosome organization of a eukaryotic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Two strategies for gene regulation by promoter nucleosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Chromatin decouples promoter threshold from dynamic range

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Chromatin remodelling at promoters suppresses antisense transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

A high-resolution atlas of nucleosome occupancy in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Genome-wide mapping of in vivo protein-DNA interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

A systems approach to measuring the binding energy landscapes of transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

A genomic code for nucleosome positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Extensive low-affinity transcriptional interactions in the yeast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

ISOLATION OF THE lambda PHAGE REPRESSOR

1 reference

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5 June 2018

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

1 reference

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5 June 2018

Gene expression from random libraries of yeast promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Genome-scale identification of nucleosome positions in S. cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Chromatin remodeling complexes: strength in diversity, precision through specialization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Transcriptional regulation by the numbers: applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Global nucleosome occupancy in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Control of stochasticity in eukaryotic gene expression

1 reference

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5 June 2018

Genetic regulatory mechanisms in the synthesis of proteins

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

18 August 2018

The structure of DNA in the nucleosome core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

On schemes of combinatorial transcription logic

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Collaborative competition mechanism for gene activation in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Stochastic gene expression in a single cell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Genome-wide location and function of DNA binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Distinct frequency-distributions of homopolymeric DNA tracts in different genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Induction of meiosis in Saccharomyces cerevisiae depends on conversion of the transcriptional represssor Ume6 to a positive regulator by its regulated association with the transcriptional activator Ime1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Chromatin Structure: A Repeating Unit of Histones and DNA

1 reference

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5 June 2018

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

5 June 2018

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

1 reference

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5 June 2018

Cooperative DNA binding of the yeast transcriptional activator GAL4.

1 reference

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5 June 2018

Nucleosome loss activates yeast downstream promoters in vivo

1 reference

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5 June 2018

Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome

1 reference

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5 June 2018

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

1 reference

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18 August 2018

Crossing the line between activation and repression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

18 August 2018

A probabilistic method to detect regulatory modules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2720181

18 August 2018

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19451592

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19451592

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/19451592

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/19451592

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.088260.108

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

release_cdra62cfunc3dhd62xd3deviee

1 reference

https://api.fatcat.wiki/v0/release/cdra62cfunc3dhd62xd3deviee

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

ResearchGate publication ID

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