Incorporating nucleosomes into thermodynamic models of transcription regulation (Q41909104)

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scientific article published on 18 May 2009

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Language	Label	Description	Also known as
English	Incorporating nucleosomes into thermodynamic models of transcription regulation	scientific article published on 18 May 2009

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

title

Incorporating nucleosomes into thermodynamic models of transcription regulation (English)

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stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

author

Eran Segal

series ordinal

3

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Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

author name string

Tali Raveh-Sadka

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

Michal Levo

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

publication date

18 May 2009

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

published in

Genome Research

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

volume

19

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stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

issue

8

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stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

page(s)

1480-1496

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Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

cites work

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Two strategies for gene regulation by promoter nucleosomes

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Chromatin decouples promoter threshold from dynamic range

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A systems approach to measuring the binding energy landscapes of transcription factors

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A genomic code for nucleosome positioning

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Extensive low-affinity transcriptional interactions in the yeast genome

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Genome-scale identification of nucleosome positions in S. cerevisiae

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Chromatin remodeling complexes: strength in diversity, precision through specialization

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Transcriptional regulation by the numbers: applications

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Global nucleosome occupancy in yeast

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Control of stochasticity in eukaryotic gene expression

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Genetic regulatory mechanisms in the synthesis of proteins

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18 August 2018

The structure of DNA in the nucleosome core

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On schemes of combinatorial transcription logic

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Collaborative competition mechanism for gene activation in vivo

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

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Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

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5 June 2018

Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences.

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Distinct frequency-distributions of homopolymeric DNA tracts in different genomes

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Induction of meiosis in Saccharomyces cerevisiae depends on conversion of the transcriptional represssor Ume6 to a positive regulator by its regulated association with the transcriptional activator Ime1.

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Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative

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Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

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Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

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Cooperative DNA binding of the yeast transcriptional activator GAL4.

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Nucleosome loss activates yeast downstream promoters in vivo

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A probabilistic method to detect regulatory modules

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Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

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The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

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A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites

1 reference

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inferred from PubMed ID database lookup

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GR.088260.108

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

Fatcat ID

release_cdra62cfunc3dhd62xd3deviee

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Fatcat

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https://api.fatcat.wiki/v0/release/cdra62cfunc3dhd62xd3deviee

retrieved

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

2720181

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

PubMed publication ID

19451592

1 reference

stated in

Europe PubMed Central

PMC publication ID

2720181

retrieved

13 October 2017

ResearchGate publication ID

24436405

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