General acid catalysis by the hepatitis delta virus ribozyme (Q44467023)

3 December 2017

title

General acid catalysis by the hepatitis delta virus ribozyme (English)

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3 December 2017

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hepatitis delta virus

object named as

hepatitis delta virus

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Subha R Das

1

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3 December 2017

Joseph A Piccirilli

series ordinal

2

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3 December 2017

language of work or name

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3 May 2005

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3 December 2017

published in

Nature Chemical Biology

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3 December 2017

volume

1

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3 December 2017

issue

1

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3 December 2017

page(s)

45-52

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Crystal structure of a hepatitis delta virus ribozyme

3 December 2017

cites work

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https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Functional involvement of G8 in the hairpin ribozyme cleavage mechanism

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Rescue of an abasic hairpin ribozyme by cationic nucleobases: evidence for a novel mechanism of RNA catalysis

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Transition state stabilization by a catalytic RNA

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

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https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Catalytic strategies of the hepatitis delta virus ribozymes

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Proton inventory of the genomic HDV ribozyme in Mg(2+)-containing solutions.

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

pK(a) perturbation in genomic Hepatitis Delta Virus ribozyme catalysis evidenced by nucleotide analogue interference mapping

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

A conformational switch controls hepatitis delta virus ribozyme catalysis

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Cross-linking experiments reveal the presence of novel structural features between a hepatitis delta virus ribozyme and its substrate

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Value of general Acid-base catalysis to ribonuclease a.

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Mechanistic consequences of mutation of active site carboxylates in a retaining beta-1,4-glycanase from Cellulomonas fimi

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Effects on general acid catalysis from mutations of the invariant tryptophan and arginine residues in the protein tyrosine phosphatase from Yersinia

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

The role of the cleavage site 2'-hydroxyl in the Tetrahymena group I ribozyme reaction

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

A novel calcium-dependent bacterial phosphatidylinositol-specific phospholipase C displaying unprecedented magnitudes of thio effect, inverse thio effect, and stereoselectivity

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Catalytic mechanism of DNA topoisomerase IB.

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Application of a 5'-bridging phosphorothioate to probe divalent metal and hammerhead ribozyme mediated RNA cleavage

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Explanation by the double-metal-ion mechanism of catalysis for the differential metal ion effects on the cleavage rates of 5'-oxy and 5'-thio substrates by a hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Caged RNA: photo-control of a ribozyme reaction

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Kinetic scheme for intermolecular RNA cleavage by a ribozyme derived from hepatitis delta virus RNA.

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Catalytic roles for proton transfer and protonation in ribozymes

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Joining of RNAs by splinted ligation

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Chromatographic properties of cytosine, cytidine and their synthetic analogues

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

4-thio-U cross-linking identifies the active site of the VS ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

The Varkud satellite ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Control of gene expression by a natural metabolite-responsive ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO703

7 January 2021

Identifiers

DOI

10.1038/NCHEMBIO703

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Dimensions Publication ID

3 December 2017

1027804036

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