Formation of regulatory modules by local sequence duplication (Q31036385)

5 September 2017

Formation of regulatory modules by local sequence duplication (English)

1 reference

5 September 2017

1

Armita Nourmohammad

1 reference

5 September 2017

Michael Lässig

2

1 reference

5 September 2017

6 October 2011

1 reference

PLOS Computational Biology

5 September 2017

1 reference

5 September 2017

7

1 reference

5 September 2017

10

1 reference

5 September 2017

e1002167

1 reference

Creative Commons Attribution 4.0 International

5 September 2017

start time

6 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

21 June 2018

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21 June 2018

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21 June 2018

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Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses

21 June 2018

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21 June 2018

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Large-scale turnover of functional transcription factor binding sites in Drosophila

21 June 2018

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Gene regulatory networks and the evolution of animal body plans

21 June 2018

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Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.

21 June 2018

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Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?

21 June 2018

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Sequence turnover and tandem repeats in cis-regulatory modules in drosophila

21 June 2018

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21 June 2018

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21 June 2018

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Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

21 June 2018

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Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

21 June 2018

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21 June 2018

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The origins of genome complexity

21 June 2018

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21 June 2018

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On the probability of fixation of mutant genes in a population

21 June 2018

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21 June 2018

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Transcription regulation and animal diversity

21 June 2018

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On schemes of combinatorial transcription logic

21 June 2018

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Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome

21 June 2018

1 reference

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

21 June 2018

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Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model

21 June 2018

1 reference

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Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

21 June 2018

1 reference

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Evidence for stabilizing selection in a eukaryotic enhancer element.

21 June 2018

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Tandem repeats finder: a program to analyze DNA sequences

21 June 2018

1 reference

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Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

Specificity, free energy and information content in protein-DNA interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

21 June 2018

1 reference

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Quantitative specificity of the Mnt repressor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

DNA sequence insertion and evolutionary variation in gene regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

Evolutionary dynamics of the enhancer region of even-skipped in Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

Spacing ensures autonomous expression of different stripe enhancers in the even-skipped promoter.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

The SV40 enhancer contains two distinct levels of organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

Regulation of a Segmentation Stripe by Overlapping Activators and Repressors in the Drosophila Embryo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

Evolution at two levels in humans and chimpanzees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188502

A probabilistic method to detect regulatory modules

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

High sequence turnover in the regulatory regions of the developmental gene hunchback in insects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

The majority of recent short DNA insertions in the human genome are tandem duplications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

REDfly: a Regulatory Element Database for Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

Differential distribution of simple sequence repeats in eukaryotic genome sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

On Information and Sufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002167

The origins of eukaryotic gene structure

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21998564

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1002167

1 reference

journals/ploscb/NourmohammadL11

5 September 2017

1 reference

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

3188502

5 September 2017

PubMed publication ID

21998564

1 reference

PMC publication ID

3188502