Transcriptional regulation by the numbers: models. (Q36083228)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15797194%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

review article

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title

Transcriptional regulation by the numbers: models (English)

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10 January 2020

2

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10 January 2020

Ulrich Gerland

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10 January 2020

Terence Hwa

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10 January 2020

3

Hernan G Garcia

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author name string

Lacramioara Bintu

1

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10 January 2020

Jané Kondev

6

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10 January 2020

Rob Phillips

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10 January 2020

publication date

1 April 2005

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Current Opinion in Genetics & Development

10 January 2020

published in

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10 January 2020

volume

15

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10 January 2020

issue

2

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10 January 2020

page(s)

116-124

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DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise.

10 January 2020

cites work

1 reference

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Transcriptional regulation by the numbers: applications

2 October 2017

1 reference

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Cooperativity in long-range gene regulation by the lambda CI repressor.

2 October 2017

1 reference

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Sensitivity of OR in phage lambda

2 October 2017

1 reference

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Detailed map of a cis-regulatory input function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

On schemes of combinatorial transcription logic

2 October 2017

1 reference

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Physical constraints and functional characteristics of transcription factor-DNA interaction.

2 October 2017

1 reference

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Specificity and robustness in transcription control networks

2 October 2017

1 reference

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Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria

2 October 2017

1 reference

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No syringes please, ejection of phage T7 DNA from the virion is enzyme driven

2 October 2017

1 reference

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Global analysis of the genetic network controlling a bacterial cell cycle

2 October 2017

1 reference

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Apo-AraC actively seeks to loop.

2 October 2017

1 reference

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Quality and position of the three lac operators of E. coli define efficiency of repression.

2 October 2017

1 reference

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Synergistic activation of transcription by Escherichia coli cAMP receptor protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

Intracellular location of catabolite activator protein of Escherichia coli.

2 October 2017

1 reference

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Quantitative model for gene regulation by lambda phage repressor

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

In vivo DNA loops in araCBAD: size limits and helical repeat

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

Regulation of even-skipped stripe 2 in the Drosophila embryo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

In vivo distribution of ribonucleic acid polymerase between cytoplasm and nucleoid in Escherichia coli

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: Measurement of DNA-bound Escherichia coli lac repressor in vivo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

Kinetics of transcription initiation at lacP1. Multiple roles of cyclic AMP receptor protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

In vitro repression of the gal promoters by GalR and HU depends on the proper helical phasing of the two operators

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

Kinetic measurements of Escherichia coli RNA polymerase association with bacteriophage T7 early promoters

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

In vivo non-specific binding of lambda CI and Cro repressors is significant.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

DNA looping and physical constraints on transcription regulation.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3482385

Gene expression during the life cycle of Drosophila melanogaster.

23 September 2018

1 reference

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Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose.

23 September 2018

1 reference

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In vivo thermodynamic analysis of repression with and without looping in lac constructs. Estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo.

23 September 2018

1 reference

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Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process

23 September 2018

1 reference

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Stability puzzles in phage lambda

23 September 2018

1 reference

12 December 2020

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

1 reference

12 December 2020

Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator

1 reference

12 December 2020

Synergistic activation of transcription by bacteriophage lambda cI protein and E. coli cAMP receptor protein

1 reference

12 December 2020

Interaction at a distance between λrepressers disrupts gene activation

1 reference

12 December 2020

Equilibrium studies of the cyclic AMP receptor protein-DNA interaction

1 reference

12 December 2020

10.1016/J.GDE.2005.02.007

Identifiers

DOI

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10 January 2020

1 reference

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10 January 2020

PubMed publication ID

15797194

1 reference