Physical constraints and functional characteristics of transcription factor-DNA interaction. (Q34155055)

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12 November 2019

title

Physical constraints and functional characteristics of transcription factor-DNA interaction (English)

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12 November 2019

3

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12 November 2019

Ulrich Gerland

series ordinal

1

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12 November 2019

author name string

J David Moroz

series ordinal

2

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12 November 2019

language of work or name

English

0 references

publication date

6 September 2002

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

12 November 2019

published in

1 reference

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12 November 2019

volume

99

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issue

19

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12 November 2019

page(s)

12015-12020

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A genomic regulatory network for development

12 November 2019

cites work

1 reference

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Specificity and robustness in transcription control networks

28 July 2018

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

28 July 2018

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Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria

28 July 2018

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Regulatory element detection using correlation with expression.

28 July 2018

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High local protein concentrations at promoters: strategies in prokaryotic and eukaryotic cells

28 July 2018

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Specificity, free energy and information content in protein-DNA interactions

28 July 2018

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Quantitative specificity of the Mnt repressor

28 July 2018

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

28 July 2018

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Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

28 July 2018

1 reference

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Spin glasses and the statistical mechanics of protein folding

28 July 2018

1 reference

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On the specificity of DNA-protein interactions

28 July 2018

1 reference

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Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129390

Transcription factors: structural families and principles of DNA recognition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129390

Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129390

Measurement of binding constants for protein-DNA interactions by DNA-cellulose chromatography.

28 July 2018

1 reference

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Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: Measurement of DNA-bound Escherichia coli lac repressor in vivo

28 July 2018

1 reference

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

28 July 2018

1 reference

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Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

21 January 2018

1 reference

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Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.192693599

Random-energy model: An exactly solvable model of disordered systems

21 January 2018

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On the selection and evolution of regulatory DNA motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.192693599

Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129390

Protein mobility in the cytoplasm of Escherichia coli.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129390

Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12218191

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dramatic changes in DNA-binding specificity caused by single residue substitutions in an Arc/Mnt hybrid repressor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12218191

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.192693599

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12218191%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

0 references

1 reference

1 reference

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12 November 2019

PubMed publication ID

12218191

1 reference