Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq (Q24320240)

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English	Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq	scientific article

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instance of

scholarly article

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title

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq (English)

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main subject

N6-methyladenosine-containing RNA binding

2 references

stated in

Gene Ontology release 2020-05-02

Gene Ontology ID

GO:1990247

stated in

GOA release 2020-03-11

YTH N6-methyladenosine RNA binding protein 3

1 reference

stated in

GOA release 2020-03-11

YTH N6-methyladenosine RNA binding protein 2

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stated in

GOA release 2020-03-11

Methyltransferase like 3

1 reference

stated in

GOA release 2020-03-11

author

Schraga Schwartz

series ordinal

3

object named as

Schraga Schwartz

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Jasmine Jacob-Hirsch

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8

object named as

Jasmine Jacob-Hirsch

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Dan Dominissini

object named as

Dan Dominissini

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1

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Mali Salmon-Divon

object named as

Mali Salmon-Divon

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4

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Gidi Rechavi

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12

object named as

Gideon Rechavi

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Ninette Amariglio

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9

object named as

Ninette Amariglio

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Sivan Osenberg

series ordinal

6

object named as

Sivan Osenberg

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Sharon Moshitch-Moshkovitz

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2

object named as

Sharon Moshitch-Moshkovitz

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Karen Cesarkas

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7

object named as

Karen Cesarkas

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author name string

Lior Ungar

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5

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Martin Kupiec

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10

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Rotem Sorek

series ordinal

11

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language of work or name

English

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publication date

10 May 2012

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published in

Nature

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volume

485

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issue

7397

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page(s)

201-6

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cites work

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Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine

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N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO

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Inhibition of in vitro translation by antibodies directed againstN6-methyladenosine

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HeLa cell RNA (2'-O-methyladenosine-N6-)-methyltransferase specific for the capped 5'-end of messenger RNA

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Nucleotide sequences at the N6-methyladenosine sites of HeLa cell messenger ribonucleic acid

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Induction of sporulation in Saccharomyces cerevisiae leads to the formation of N6-methyladenosine in mRNA: a potential mechanism for the activity of the IME4 gene

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Differential expression analysis for sequence count data

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TopHat: discovering splice junctions with RNA-Seq

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Antibody nucleic acid complexes. Immunospecific retention of N6-methyladenosine-containing transfer ribonucleic acid

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PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.

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Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB.

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Characterization of antibodies specific for N6-methyladenosine and for 7-methylguanosine

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Genomic DNA methylation: the mark and its mediators

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Detecting differential usage of exons from RNA-seq data

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Tumor necrosis factor alpha and gamma-interferon enhancement of anti-epidermal growth factor receptor monoclonal antibody binding to human melanoma cells.

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Accumulation of spliced avian retrovirus mRNA is inhibited in S-adenosylmethionine-depleted chicken embryo fibroblasts

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Sequences responsible for intracellular localization of beta-actin messenger RNA also affect cell phenotype

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Model-based analysis of ChIP-Seq (MACS)

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N6-methyladenosine residues in an intron-specific region of prolactin pre-mRNA.

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N6, O2'-dimethyladenosine a novel methylated ribonucleoside next to the 5' terminal of animal cell and virus mRNAs

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BEDTools: a flexible suite of utilities for comparing genomic features

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Selective elimination of messenger RNA prevents an incidence of untimely meiosis

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Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells

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inferred from PubMed ID database lookup

Sequence specificity of the human mRNA N6-adenosine methylase in vitro

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12 December 2020

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Antibody-nucleic acid complexes. Immunospecific recognition of 7-methylguanine- and N6-methyladenine-containing 5'-terminal oligonucleotides of mRNA

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PubMed

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The YTH domain is a novel RNA binding domain

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12 December 2020

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inferred from PubMed ID database lookup

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

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The UCSC Known Genes

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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PubMed

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12 December 2020

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The intranuclear localization and function of YT521-B is regulated by tyrosine phosphorylation

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic identification of abundant A-to-I editing sites in the human transcriptome

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

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PubMed

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12 December 2020

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inferred from PubMed ID database lookup

Drosophila Inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis

1 reference

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PubMed

reference URL

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immunospecific retention of oligonucleotides possessing N6-methyladenosine and 7-methylguanosine

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/22575960

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing and evolution: diversification, exon definition and function

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PubMed

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inferred from PubMed ID database lookup

Functions of MDMX in the modulation of the p53-response

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Identification of novel transcripts in annotated genomes using RNA-Seq

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PubMed

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based on heuristic

inferred from PubMed ID database lookup

Antibodies specific for N6-methyladenosine react with intact snRNPs U2 and U4/U6

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PubMed

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based on heuristic

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RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage

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PubMed

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Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

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based on heuristic

inferred from PubMed ID database lookup

Interferon-induced enhancement of transforming growth factor-alpha expression in a human breast cancer cell line

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of 6-methyladenine formation decreases the translation efficiency of dihydrofolate reductase transcripts.

1 reference

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor

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PubMed

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12 December 2020

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inferred from PubMed ID database lookup

The methylated constituents of L cell messenger RNA: evidence for an unusual cluster at the 5' terminus

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Grand Challenge Commentary: RNA epigenetics?

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12 December 2020

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inferred from PubMed ID database lookup

A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress

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12 December 2020

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The biosynthesis and functional roles of methylated nucleosides in eukaryotic mRNA

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Crossref

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inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE11112

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1121160

Dimensions Publication ID

1040794705

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Fatcat ID

release_avlvu7ekxrbfrebhk7lang7qsa

0 references

OpenCitations bibliographic resource ID

1121160

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1121160

PubMed publication ID

22575960

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1121160

ResearchGate publication ID

224939250

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