PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds (Q24646430)

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English	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds	scientific article

Statements

instance of

scholarly article

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title

PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds (English)

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main subject

computational mathematics

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author name string

Yangho Chen

series ordinal

1

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Tade Souaiaia

series ordinal

2

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Ting Chen

series ordinal

3

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language of work or name

English

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publication date

1 October 2009

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published in

Bioinformatics

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stated in

PubMed

volume

25

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issue

19

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page(s)

2514-21

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cites work

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7 April 2017

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7 April 2017

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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7 April 2017

Mapping short DNA sequencing reads and calling variants using mapping quality scores

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7 April 2017

ZOOM! Zillions of oligos mapped

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7 April 2017

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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7 April 2017

Improved hit criteria for DNA local alignment

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7 April 2017

BLAT—The BLAST-Like Alignment Tool

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7 April 2017

Basic local alignment search tool

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7 April 2017

SOAP: short oligonucleotide alignment program

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7 April 2017

Patternhunter II: highly sensitive and fast homology search

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PatternHunter: faster and more sensitive homology search

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Next-generation DNA sequencing

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7 April 2017

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Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

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MOM: maximum oligonucleotide mapping

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PASS: a program to align short sequences.

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Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

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28 November 2018

Multiseed lossless filtration.

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28 November 2018

Optimizing multiple spaced seeds for homology search.

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PubMed Central

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28 November 2018

Designing multiple simultaneous seeds for DNA similarity search.

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752623

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28 November 2018

Solexa Ltd.

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752623

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28 November 2018

A fast bit-vector algorithm for approximate string matching based on dynamic programming

1 reference

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Crossref

reference URL

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP486

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP486

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DBLP publication ID

journals/bioinformatics/ChenSC09

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PMC publication ID

2752623

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PubMed publication ID

19675096

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ResearchGate publication ID

26736492

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