Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli (Q24684800)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12975324%20AND%20SRC:MED&resulttype=core&format=json

8 November 2019

title

Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli (English)

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8 November 2019

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2

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8 November 2019

3

Susan Gottesman

1 reference

8 November 2019

Eric Massé

1

1 reference

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8 November 2019

language of work or name

English

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publication date

15 September 2003

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8 November 2019

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8 November 2019

volume

17

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8 November 2019

issue

19

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8 November 2019

page(s)

2374-2383

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Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure

8 November 2019

cites work

1 reference

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Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

7 April 2017

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Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein

7 April 2017

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A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

7 April 2017

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Identification of novel small RNAs using comparative genomics and microarrays

7 April 2017

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Hfq is necessary for regulation by the untranslated RNA DsrA

7 April 2017

1 reference

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A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures

7 April 2017

1 reference

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The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

7 April 2017

1 reference

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DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

7 April 2017

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The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli

7 April 2017

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Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

7 April 2017

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Global analysis of small RNA and mRNA targets of Hfq

7 April 2017

1 reference

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The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

7 April 2017

1 reference

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microRNAs: tiny regulators with great potential

7 April 2017

1 reference

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Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA

7 April 2017

1 reference

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Regulation of RpoS by a novel small RNA: the characterization of RprA

7 April 2017

1 reference

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Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E

7 April 2017

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A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

7 April 2017

1 reference

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RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals

7 April 2017

1 reference

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Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

7 April 2017

1 reference

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Stealth regulation: biological circuits with small RNA switches

7 April 2017

1 reference

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Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli

28 September 2017

1 reference

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Iron metabolism in pathogenic bacteria.

28 September 2017

1 reference

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Fur positive regulation of iron superoxide dismutase in Escherichia coli: functional analysis of the sodB promoter

28 September 2017

1 reference

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Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

Messenger RNA stability and its role in control of gene expression in bacteria and phages

28 September 2017

1 reference

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mRNA degradation. A tale of poly(A) and multiprotein machines.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

Ferritin mutants of Escherichia coli are iron deficient and growth impaired, and fur mutants are iron deficient

28 September 2017

1 reference

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Host factor I, Hfq, binds to Escherichia coli ompA mRNA in a growth rate-dependent fashion and regulates its stability.

28 September 2017

1 reference

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The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

28 September 2017

1 reference

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Proteins associated with RNase E in a multicomponent ribonucleolytic complex

28 September 2017

1 reference

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Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.

28 September 2017

1 reference

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A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.

28 September 2017

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Genetic analysis of the rnc operon of Escherichia coli

28 September 2017

1 reference

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Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro

28 September 2017

1 reference

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Structure, function, and evolution of ferritins.

28 September 2017

1 reference

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A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator

28 September 2017

1 reference

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A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

The role of RNA structure in determining RNase E-dependent cleavage sites in the mRNA for ribosomal protein S20 in vitro

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

A protein complex mediating mRNA degradation in Escherichia coli.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

Degradation pathway of CopA, the antisense RNA that controls replication of plasmid R1.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

micF RNA is a substrate for RNase E.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218075

Sok antisense RNA from plasmid R1 is functionally inactivated by RNase E and polyadenylated by poly(A) polymerase I

28 November 2018

1 reference

12 December 2020

Iron storage in bacteria

1 reference

12 December 2020

The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo

1 reference

12 December 2020

Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly

1 reference

12 December 2020

Fur-mediated transcriptional and post-transcriptional regulation of FeSOD expression in Escherichia coli

1 reference

12 December 2020

Evidence for two functional gal promoters in intact Escherichia coli cells

1 reference

12 December 2020

Cloning of E. coli pnp gene from an episome

1 reference

12 December 2020

RNase E, an endoribonuclease, has a general role in the chemical decay of Escherichia coli mRNA: evidence that rne and ams are the same genetic locus

1 reference

12 December 2020

Identifiers

DOI

10.1101/GAD.1127103

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12975324%20AND%20SRC:MED&resulttype=core&format=json

8 November 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12975324%20AND%20SRC:MED&resulttype=core&format=json

8 November 2019

PubMed publication ID

12975324

2 references