Structural determinants for the binding of ubiquitin-like domains to the proteasome (Q24685639)

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English	Structural determinants for the binding of ubiquitin-like domains to the proteasome	scientific article

Statements

instance of

scholarly article

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title

Structural determinants for the binding of ubiquitin-like domains to the proteasome (English)

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main subject

ubiquitin-proteasome system

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author

Juli Feigon

series ordinal

2

object named as

Juli Feigon

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author name string

Thomas D Mueller

series ordinal

1

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language of work or name

English

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publication date

15 September 2003

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published in

The EMBO Journal

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volume

22

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issue

18

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page(s)

4634-45

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cites work

Rad23 ubiquitin-associated domains (UBA) inhibit 26 S proteasome-catalyzed proteolysis by sequestering lysine 48-linked polyubiquitin chains

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PubMed Central

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7 April 2017

Involvement of rhp23, a Schizosaccharomyces pombe homolog of the human HHR23A and Saccharomyces cerevisiae RAD23 nucleotide excision repair genes, in cell cycle control and protein ubiquitination

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PubMed Central

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7 April 2017

Ubiquitin-associated (UBA) domains in Rad23 bind ubiquitin and promote inhibition of multi-ubiquitin chain assembly

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

3-Methyladenine-DNA glycosylase (MPG protein) interacts with human RAD23 proteins

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PubMed Central

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7 April 2017

Recognition of the polyubiquitin proteolytic signal

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PubMed Central

reference URL

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7 April 2017

Interaction of hHR23 with S5a. The ubiquitin-like domain of hHR23 mediates interaction with S5a subunit of 26 S proteasome

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Two human homologs of Rad23 are functionally interchangeable in complex formation and stimulation of XPC repair activity

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PubMed Central

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7 April 2017

Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Mechanism of ubiquitin recognition by the CUE domain of Vps9p

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Structure and Ubiquitin Binding of the Ubiquitin-interacting Motif

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Solution structures of UBA domains reveal a conserved hydrophobic surface for protein-protein interactions

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Structural studies of the interaction between ubiquitin family proteins and proteasome subunit S5a

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Biochemical and structural analysis of the interaction between the UBA(2) domain of the DNA repair protein HHR23A and HIV-1 Vpr

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

The rub family of ubiquitin-like proteins. Crystal structure of Arabidopsis rub1 and expression of multiple rubs in Arabidopsis

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Structure determination of the small ubiquitin-related modifier SUMO-1

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Structure of ubiquitin refined at 1.8 A resolution

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Proteasome subunit Rpn1 binds ubiquitin-like protein domains

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

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7 April 2017

UBA domains of DNA damage-inducible proteins interact with ubiquitin

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

Affinity of yeast nucleotide excision repair factor 2, consisting of the Rad4 and Rad23 proteins, for ultraviolet damaged DNA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

The hPLIC proteins may provide a link between the ubiquitination machinery and the proteasome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

Hrs sorts ubiquitinated proteins into clathrin-coated microdomains of early endosomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

A single motif responsible for ubiquitin recognition and monoubiquitination in endocytic proteins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

Proteins containing the UBA domain are able to bind to multi-ubiquitin chains

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

Rad23 links DNA repair to the ubiquitin/proteasome pathway

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

Amino acid preferences for specific locations at the ends of alpha helices

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

7 April 2017

Transferring substrates to the 26S proteasome.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

A ubiquitin-interacting motif from Hrs binds to and occludes the ubiquitin surface necessary for polyubiquitination in monoubiquitinated proteins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

Rad23 promotes the targeting of proteolytic substrates to the proteasome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

A role for Rad23 proteins in 26S proteasome-dependent protein degradation?

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

Rad23 provides a link between the Png1 deglycosylating enzyme and the 26 S proteasome in yeast.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

Dosage suppressors of pds1 implicate ubiquitin-associated domains in checkpoint control

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

Structure of a human DNA repair protein UBA domain that interacts with HIV-1 Vpr.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

Identification and characterization of XPC-binding domain of hHR23B.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

Surface hydrophobic residues of multiubiquitin chains essential for proteolytic targeting

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 September 2017

New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 November 2018

Recognition of specific ubiquitin conjugates is important for the proteolytic functions of the ubiquitin-associated domain proteins Dsk2 and Rad23.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212733

retrieved

28 November 2018

The DNA repair protein rad23 is a negative regulator of multi-ubiquitin chain assembly

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12970176

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The hydrophobic effect contributes to polyubiquitin chain recognition

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12970176

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/EMBOJ/CDG467

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3454440

OpenCitations bibliographic resource ID

3454440

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3454440

PMC publication ID

212733

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3454440

PubMed publication ID

12970176

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3454440

ResearchGate publication ID

5265002

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