TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes (Q24794743)

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6 January 2020

title

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes (English)

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6 January 2020

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1

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Vladimir Espinosa Angarica

6 January 2020

2

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6 January 2020

Ana Tereza R Vasconcelos

3

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6 January 2020

https://orcid.org/0000-0002-4632-2086

Julio Collado-Vides

5

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6 January 2020

author name string

Ernesto Pérez-Rueda

4

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6 January 2020

language of work or name

English

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publication date

1 January 2005

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6 January 2020

published in

Nucleic Acids Research

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6 January 2020

volume

33

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6 January 2020

issue

Database issue

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6 January 2020

page(s)

D98-102

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Operons in Escherichia coli: genomic analyses and predictions

6 January 2020

cites work

1 reference

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In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon

7 April 2017

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A comparative genomics approach to prediction of new members of regulons

7 April 2017

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

7 April 2017

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

7 April 2017

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Identifying global regulators in transcriptional regulatory networks in bacteria

7 April 2017

1 reference

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Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data

28 September 2017

1 reference

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Gibbs Recursive Sampler: finding transcription factor binding sites

28 September 2017

1 reference

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On schemes of combinatorial transcription logic

28 September 2017

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Identification of the binding sites of regulatory proteins in bacterial genomes

28 September 2017

1 reference

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Structural analysis of conserved base pairs in protein-DNA complexes

28 September 2017

1 reference

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The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons

28 September 2017

1 reference

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Comparative analysis of FUR regulons in gamma-proteobacteria

28 September 2017

1 reference

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Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

28 September 2017

1 reference

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The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.

28 September 2017

1 reference

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Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

28 September 2017

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Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.

28 November 2018

1 reference

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A powerful non-homology method for the prediction of operons in prokaryotes

28 November 2018

1 reference

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Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540008

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli

28 November 2018

1 reference

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Transcription regulation and environmental adaptation in bacteria

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15608293

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI054

1 reference

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journals/nar/GonzalezEVPC05

6 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608293%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

PubMed publication ID

15608293

1 reference