Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs (Q24798650)

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English	Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs	scientific article

Statements

instance of

scholarly article

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title

Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs (English)

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main subject

RNA analysis

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based on heuristic

inferred from title

author

Tamar Schlick

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author name string

Samuela Pasquali

series ordinal

1

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Hin Hark Gan

series ordinal

2

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language of work or name

English

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publication date

2005

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published in

Nucleic Acids Research

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volume

33

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issue

4

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page(s)

1384-98

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cites work

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Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

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7 April 2017

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

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7 April 2017

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7 April 2017

Vienna RNA secondary structure server

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7 April 2017

Computational identification of noncoding RNAs in E. coli by comparative genomics

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A box H/ACA small nucleolar RNA-like domain at the human telomerase RNA 3' end

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A new algorithm for RNA secondary structure design

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28 September 2017

tRNA-like structure regulates translation of Brome mosaic virus RNA.

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28 September 2017

RAG: RNA-As-Graphs database--concepts, analysis, and features

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28 September 2017

RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space

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28 September 2017

Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design

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28 September 2017

Analysis of protein sequence/structure similarity relationships

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28 September 2017

The chemical repertoire of natural ribozymes

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28 September 2017

An expanding universe of noncoding RNAs

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28 September 2017

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28 September 2017

A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.

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28 September 2017

Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.

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28 September 2017

A 9-nt segment of a cellular mRNA can function as an internal ribosome entry site (IRES) and when present in linked multiple copies greatly enhances IRES activity

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28 September 2017

PseudoBase: a database with RNA pseudoknots

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28 September 2017

The European small subunit ribosomal RNA database

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28 September 2017

How RNA folds

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28 September 2017

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28 September 2017

Complete genomic sequence and phylogenetic analysis of the lactate dehydrogenase-elevating virus (LDV).

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28 September 2017

Basepairing with 18S ribosomal RNA in internal initiation of translation

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28 September 2017

Inventing and improving ribozyme function: rational design versus iterative selection methods

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28 September 2017

Optimal alignments in linear space

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28 September 2017

Detection of common motifs in RNA secondary structures

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28 September 2017

Comparing multiple RNA secondary structures using tree comparisons

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28 September 2017

Structural motifs in ribosomal RNAs: implications for RNA design and genomics

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30 May 2018

Secondary structure and mutational analysis of the ribosomal frameshift signal of rous sarcoma virus

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30 May 2018

A graph-topological approach to recognition of pattern and similarity in RNA secondary structures.

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30 May 2018

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

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30 May 2018

Use of buildup and energy-minimization procedures to compute low-energy structures of the backbone of enkephalin.

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Mutational analysis of the tRNA mimicry of brome mosaic virus RNA. Sequence and structural requirements for aminoacylation and 3'-adenylation

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30 May 2018

An algorithm for comparing RNA secondary structures and searching for similar substructures.

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Candidates for novel RNA topologies

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Design, construction, and analysis of a novel class of self-folding RNA.

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On interpretation of well-known topological indices

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Structural genomics of RNA.

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Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs

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28 November 2018

Statistics of RNA secondary structures

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Tree graphs of RNA secondary structures and their comparisons

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Identifiers

DOI

10.1093/NAR/GKI267

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PMC publication ID

552955

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PubMed publication ID

15745998

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ResearchGate publication ID

7988111

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