Recognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic features (Q24792130)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	Recognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic features	scientific article

Statements

instance of

scholarly article

0 references

title

Recognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic features (English)

0 references

main subject

spliceosome

0 references

author name string

Darui Xu

series ordinal

1

0 references

Nancy L Greenbaum

series ordinal

2

0 references

Marcia O Fenley

series ordinal

3

0 references

language of work or name

English

0 references

publication date

2005

0 references

published in

Nucleic Acids Research

0 references

volume

33

0 references

issue

4

0 references

page(s)

1154-61

0 references

cites work

Electrostatics of nanosystems: application to microtubules and the ribosome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

The Protein Data Bank

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

The interpretation of protein structures: Estimation of static accessibility

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

Reduced surface: an efficient way to compute molecular surfaces

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

7 April 2017

GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Microenvironment analysis and identification of magnesium binding sites in RNA

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Characterization of the catalytic activity of U2 and U6 snRNAs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Investigation of Overhauser effects between pseudouridine and water protons in RNA helices

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

The non-Watson-Crick base pairs and their associated isostericity matrices

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

A thermodynamic framework for Mg2+ binding to RNA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

What are the dielectric "constants" of proteins and how to validate electrostatic models?

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Strategies for the Design of Drugs Targeting RNA and RNA-Protein Complexes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

RNA folding: beyond Watson-Crick pairs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Localization of modified nucleotides in Schizosaccharomyces pombe spliceosomal small nuclear RNAs: modified nucleotides are clustered in functionally important regions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Three recognition events at the branch-site adenine.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Pseudouridine formation in U2 small nuclear RNA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

The molecular electrostatic potential and steric accessibility of A-DNA

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Molecular electrostatic potential of the nucleic acids

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 September 2017

Efficient solution technique for solving the Poisson-Boltzmann equation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 November 2018

Hybrid boundary element and finite difference method for solving the nonlinear Poisson-Boltzmann equation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 November 2018

Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 November 2018

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549433

retrieved

28 November 2018

Two aspects of DNA polymorphism and microheterogeneity: molecular electrostatic potential and steric accessibility

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15728744

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Docking of cationic antibiotics to negatively charged pockets in RNA folds

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15728744

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Calculation of the electric potential in the active site cleft due to alpha-helix dipoles

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15728744

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15728744

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solvent-accessible surfaces of nucleic acids

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15728744

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKI249

0 references

PMC publication ID

549433

0 references

PubMed publication ID

15728744

0 references

ResearchGate publication ID

8004430

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24792130&oldid=1394389564"