Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs (Q24803152)

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English	Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs	scientific article

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Ferdinando Di Cunto

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Michele Caselle

5

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28 December 2019

author name string

Davide Corà

1

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28 December 2019

Paolo Provero

3

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28 December 2019

Lorenzo Silengo

4

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28 December 2019

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11 May 2004

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Europe PubMed Central

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28 December 2019

BMC Bioinformatics

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

5

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28 December 2019

1

0 references

57

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Sequencing and comparison of yeast species to identify genes and regulatory elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Transcriptional regulatory networks in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

The fork head transcription factor Hcm1p participates in the regulation of SPC110, which encodes the calmodulin-binding protein in the yeast spindle pole body.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

TRANSFAC: transcriptional regulation, from patterns to profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

7 April 2017

Regulatory sequence analysis tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

Aft1p and Aft2p mediate iron-responsive gene expression in yeast through related promoter elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

Genome-wide co-occurrence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

Anatomy of a transcription factor important for the start of the cell cycle in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

28 September 2017

RPC19, the gene for a subunit common to yeast RNA polymerases A (I) and C (III).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449910

30 May 2018

Regulation of genes encoding subunits of the trehalose synthase complex in Saccharomyces cerevisiae: novel variations of STRE-mediated transcription control?

1 reference

https://pubmed.ncbi.nlm.nih.gov/15137914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional control of the yeast acetyl-CoA synthetase gene, ACS1, by the positive regulators CAT8 and ADR1 and the pleiotropic repressor UME6

1 reference

https://pubmed.ncbi.nlm.nih.gov/15137914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-5-57

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

DBLP publication ID

journals/bmcbi/CoraCPSC04

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15137914%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

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