Structural and evolutionary classification of G/U wobble basepairs in the ribosome (Q25255904)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16522645%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Structural and evolutionary classification of G/U wobble basepairs in the ribosome (English)

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17 January 2020

3

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17 January 2020

author name string

Ali Mokdad

series ordinal

1

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17 January 2020

Maryna V Krasovska

series ordinal

2

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17 January 2020

Neocles B Leontis

series ordinal

4

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17 January 2020

language of work or name

English

0 references

publication date

6 March 2006

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17 January 2020

published in

Nucleic Acids Research

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17 January 2020

volume

34

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17 January 2020

issue

5

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17 January 2020

page(s)

1326-1341

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Rfam: annotating non-coding RNAs in complete genomes

17 January 2020

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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The kink-turn: a new RNA secondary structure motif

7 April 2017

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Recognition of cognate transfer RNA by the 30S ribosomal subunit

7 April 2017

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7 April 2017

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7 April 2017

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The structural basis of ribosome activity in peptide bond synthesis

7 April 2017

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 April 2017

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A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.

7 April 2017

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Investigation of the structural basis for thermodynamic stabilities of tandem GU wobble pairs: NMR structures of (rGGAGUUCC)2 and (rGGAUGUCC)2

7 April 2017

1 reference

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Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition

7 April 2017

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Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing

7 April 2017

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Crystal structure of a group I ribozyme domain: principles of RNA packing

7 April 2017

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7 April 2017

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 April 2017

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7 April 2017

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7 April 2017

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Molecular modeling of the three-dimensional structure of the bacterial RNase P holoenzyme

7 April 2017

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A ratchet-like inter-subunit reorganization of the ribosome during translocation

7 April 2017

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7 April 2017

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7 April 2017

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28 September 2017

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Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases

28 September 2017

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Structure of a purine-purine wobble base pair in the decoding center of the ribosome

28 September 2017

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28 September 2017

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The non-Watson-Crick base pairs and their associated isostericity matrices

28 September 2017

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28 September 2017

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The European Large Subunit Ribosomal RNA Database

28 September 2017

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The relationship of thermodynamic stability at a G x U recognition site to tRNA aminoacylation specificity

28 September 2017

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Correlation of deformability at a tRNA recognition site and aminoacylation specificity

28 September 2017

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Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

28 September 2017

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Divalent metal ion binding to a conserved wobble pair defining the upstream site of cleavage of group I self-splicing introns

28 September 2017

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Codon--anticodon pairing: the wobble hypothesis

28 September 2017

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RNA structure, not sequence, determines the 5' splice-site specificity of a group I intron

28 September 2017

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Improved predictions of secondary structures for RNA

28 September 2017

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Ribozyme catalysis from the major groove of group II intron domain 5.

28 September 2017

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31 May 2018

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The role of modifications in codon discrimination by tRNA(Lys)UUU.

28 November 2018

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The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

28 November 2018

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Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs

28 November 2018

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GU receptors of double helices mediate tRNA movement in the ribosome

28 November 2018

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Thermodynamic stabilities of internal loops with GU closing pairs in RNA.

28 November 2018

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28 November 2018

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Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs

28 November 2018

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G.U base pairing motifs in ribosomal RNA.

28 November 2018

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Crystallographic refinement of yeast aspartic acid transfer RNA

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16522645

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Energetics of internal GU mismatches in ribooligonucleotide helixes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16522645

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16522645

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL025

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16522645%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16522645%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

16522645

1 reference