tRNA properties help shape codon pair preferences in open reading frames (Q25256741)

6 July 2017

title

tRNA properties help shape codon pair preferences in open reading frames (English)

1 reference

6 July 2017

J Ross Buchan

1

1 reference

6 July 2017

Lorna S Aucott

series ordinal

2

1 reference

6 July 2017

Ian Stansfield

series ordinal

3

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6 July 2017

language of work or name

English

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publication date

9 February 2006

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6 July 2017

published in

Nucleic Acids Research

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6 July 2017

volume

34

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6 July 2017

issue

3

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6 July 2017

page(s)

1015-1027

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Comparative context analysis of codon pairs on an ORFeome scale

6 July 2017

cites work

1 reference

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7 April 2017

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Improvement of reading frame maintenance is a common function for several tRNA modifications

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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28 September 2017

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Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting

28 September 2017

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28 September 2017

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28 September 2017

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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Selection of aminoacyl-tRNAs at sense codons: the size of the tRNA variable loop determines whether the immediate 3' nucleotide to the codon has a context effect

28 September 2017

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Codon catalog usage and the genome hypothesis

28 September 2017

1 reference

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Codon usage can affect efficiency of translation of genes inEscherichia coli

28 September 2017

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Nonrandom utilization of codon pairs in Escherichia coli

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

1 reference

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Systematic alterations in the anticodon arm make tRNA(Glu)-Suoc a more efficient suppressor

28 September 2017

1 reference

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The efficiency of folding of some proteins is increased by controlled rates of translation in vivo. A hypothesis

28 September 2017

1 reference

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SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

28 September 2017

1 reference

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Codon pair utilization biases influence translational elongation step times

31 May 2018

1 reference

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Escherichia coli ribosomes translate in vivo with variable rate

31 May 2018

1 reference

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The frequency of errors in protein biosynthesis

31 May 2018

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Codon contexts from weakly expressed genes reduce expression in vivo.

31 May 2018

1 reference

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Rates of aminoacyl-tRNA selection at 29 sense codons in vivo.

31 May 2018

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Characterization of ribosomal frameshifting in HIV-1 gag-pol expression

31 May 2018

1 reference

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Selective charging of tRNA isoacceptors explains patterns of codon usage.

31 May 2018

1 reference

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Growth rate-optimised tRNA abundance and codon usage.

31 May 2018

1 reference

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Sense codons are found in specific contexts.

31 May 2018

1 reference

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Evidence for a unique first position codon-anticodon mismatch in vivo.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1363775

Codon pairs in the genome of Escherichia coli

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1363775

Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1363775

Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1363775

Release factor-dependent false stops are infrequent in Escherichia coli.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1363775

28 November 2018

tmRDB (tmRNA database)

1 reference

12 December 2020

Effects of surrounding sequence on the suppression of nonsense codons

1 reference

12 December 2020

Codon usage determines translation rate in Escherichia coli

1 reference

12 December 2020

Programmed translational frameshifting

1 reference

12 December 2020

Missense translation errors in Saccharomyces cerevisiae

1 reference

12 December 2020

The modification of the wobble base of tRNAGlu modulates the translation rate of glutamic acid codons in vivo

1 reference

12 December 2020

The Bacterial Toxin RelE Displays Codon-Specific Cleavage of mRNAs in the Ribosomal A Site

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKJ488

1 reference

6 July 2017

1 reference

6 July 2017

1 reference