Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions (Q25257425)

6 July 2017

title

Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions (English)

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6 July 2017

3

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Romina Oliva

series ordinal

1

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Luigi Cavallo

object named as

Luigi Cavallo

series ordinal

2

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language of work or name

English

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publication date

6 February 2006

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6 July 2017

published in

Nucleic Acids Research

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6 July 2017

volume

34

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6 July 2017

issue

3

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6 July 2017

page(s)

865-879

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A T-stem slip in human mitochondrial tRNALeu(CUN) governs its charging capacity

6 July 2017

cites work

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Characterizing the function and structural organization of the 5' tRNA-like motif within the hepatitis C virus quasispecies

7 April 2017

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Compilation of tRNA sequences and sequences of tRNA genes

7 April 2017

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Geometric nomenclature and classification of RNA base pairs

7 April 2017

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Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion

7 April 2017

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Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase.

7 April 2017

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The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

7 April 2017

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Tertiary core rearrangements in a tight binding transfer RNA aptamer

7 April 2017

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Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals

7 April 2017

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Further refinement of the structure of yeast tRNAPhe

7 April 2017

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Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement

7 April 2017

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Aminoacylation and conformational properties of yeast mitochondrial tRNA mutants with respiratory deficiency

7 April 2017

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Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

7 April 2017

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Compilation of tRNA sequences and sequences of tRNA genes

7 April 2017

1 reference

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Specific and non-specific purine trap in the T-loop of normal and suppressor tRNAs

7 April 2017

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Key elements in maintenance of the tRNA L-shape

28 September 2017

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Importance of the reverse Hoogsteen base pair 54-58 for tRNA function

28 September 2017

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Tertiary structure base pairs between D- and TpsiC-loops of Escherichia coli tRNA(Leu) play important roles in both aminoacylation and editing

28 September 2017

1 reference

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Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding

28 September 2017

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Structural variation and functional importance of a D-loop-T-loop interaction in valine-accepting tRNA-like structures of plant viral RNAs

28 September 2017

1 reference

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Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

28 September 2017

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NCIR: a database of non-canonical interactions in known RNA structures

28 September 2017

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The Protein Data Bank and the challenge of structural genomics

28 September 2017

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Conservation of a tRNA core for aminoacylation

28 September 2017

1 reference

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Hydrogen bonding and stacking of DNA bases: a review of quantum-chemical ab initio studies.

28 September 2017

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Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme

28 September 2017

1 reference

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Influence of tRNA tertiary structure and stability on aminoacylation by yeast aspartyl-tRNA synthetase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361619

Structure of yeast phenylalanine tRNA at 3 Å resolution

28 September 2017

1 reference

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Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

28 September 2017

1 reference

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Comparative structural analysis of 1-methyladenosine, 7-methylguanosine, ethenoadenosine and their protonated salts IV: 1H, 13C, and 15N NMR studies at natural isotope abundance

28 September 2017

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Glycine tRNA mutants with normal anticodon loop size cause -1 frameshifting

28 September 2017

1 reference

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Hydrogen bonding in yeast phenylalanine transfer RNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361619

Demonstration of a tertiary interaction in solution between the extra arm and the D-stem in two different transfer RNA's by NMR

28 September 2017

1 reference

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On the occurrence of the T-loop RNA folding motif in large RNA molecules

28 September 2017

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Matrices of paired substitutions show the effects of tRNA D/T loop sequence on Drosophila RNase P and 3'-tRNase processing.

31 May 2018

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Transfer RNA contains sites of localized positive charge: carbon NMR studies of [13C]methyl-enriched Escherichia coli and yeast tRNAPhe

31 May 2018

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Seven, eight and nine-membered anticodon loop mutants of tRNA(2Arg) which cause +1 frameshifting. Tolerance of DHU arm and other secondary mutations

31 May 2018

1 reference

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Are the hydrogen bonds of RNA (AU) stronger than those of DNA (AT)? A quantum mechanics study.

31 May 2018

1 reference

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Hydrogen bonds of RNA are stronger than those of DNA, but NMR monitors only presence of methyl substituent in uracil/thymine.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361619

Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361619

Alternative design of a tRNA core for aminoacylation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361619

Effects of nucleotide substitutions within the T-loop of precursor tRNAs on interaction with ATP/CTP:tRNA nucleotidyltransferases from Escherichia coli and yeast

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361619

The three-dimensional structure of transfer RNA / Alexander Rich and Sung Hou Kim. - (1.1978)

28 November 2018

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The lonepair triloop: a new motif in RNA structure

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Probing a tRNA core that contributes to aminoacylation

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Novel transfer RNAs that are active in Escherichia coli

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Nonplanar DNA Base Pairs

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Structure, Energetics, and Dynamics of the Nucleic Acid Base Pairs: NonempiricalAb InitioCalculations

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Hydrogen-bonded Trimers of DNA Bases and their Interaction with Metal Cations: Ab initio Quantum-chemical and Empirical Potential Study

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Generalized gradient approximation for the exchange-correlation hole of a many-electron system

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The Structure and Dynamics of DNA in the Gas Phase

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Identifiers

DOI

10.1093/NAR/GKJ491

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6 July 2017

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6 July 2017

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