The analytical landscape of static and temporal dynamics in transcriptome data (Q26991596)

Seongho Song

series ordinal

2

1 reference

Nupur Dasgupta

series ordinal

3

1 reference

Gregory Grabowski

series ordinal

4

1 reference

language of work or name

1 reference

2014

1 reference

published in

Frontiers in Genetics

1 reference

volume

5

1 reference

page(s)

35

1 reference

describes a project that uses

limma

object named as

LIMMA

2 references

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3929947

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

28 September 2017

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28 September 2017

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RNA splicing: disease and therapy

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Complement receptor 2 polymorphisms associated with systemic lupus erythematosus modulate alternative splicing

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules

28 September 2017

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Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework

28 September 2017

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Isolation and molecular profiling of bone marrow micrometastases identifies TWIST1 as a marker of early tumor relapse in breast cancer patients

28 September 2017

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THE INTERPRETATION OF EXPERIMENTAL FOUR-FOLD TABLES.

28 September 2017

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Clustering of time-course gene expression data using functional data analysis

28 September 2017

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Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data

28 September 2017

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Modulating the expression of disease genes with RNA-based therapy.

28 September 2017

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Digital signal processing reveals circadian baseline oscillation in majority of mammalian genes

28 September 2017

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Pre-processing Agilent microarray data

28 September 2017

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Analysis of time-series gene expression data: methods, challenges, and opportunities

28 September 2017

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28 September 2017

Understanding SAGE data

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STEM: a tool for the analysis of short time series gene expression data

28 September 2017

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Gene Time E{chi}pression Warper: a tool for alignment, template matching and visualization of gene expression time series

28 September 2017

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Tight clustering: a resampling-based approach for identifying stable and tight patterns in data

28 September 2017

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Experimental design and low-level analysis of microarray data

28 September 2017

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Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data

28 September 2017

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Identifying periodically expressed transcripts in microarray time series data

28 September 2017

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Statistical significance analysis of longitudinal gene expression data

28 September 2017

1 reference

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Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes

28 September 2017

1 reference

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Differential expression in SAGE: accounting for normal between-library variation.

28 September 2017

1 reference

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Using hidden Markov models to analyze gene expression time course data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Clustering of time-course gene expression data using a mixed-effects model with B-splines

28 September 2017

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The use and analysis of microarray data

28 September 2017

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Patients' perceptions of entitlement to time in general practice consultations for depression: qualitative study

28 September 2017

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Cluster analysis of gene expression dynamics

28 September 2017

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Analysis techniques for microarray time-series data

28 September 2017

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Real time visualization of protein kinase activity in living cells.

28 September 2017

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Time course of LPS-induced gene expression in a mouse model of genitourinary inflammation

28 September 2017

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Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources

28 September 2017

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Large-scale temporal gene expression mapping of central nervous system development

28 September 2017

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Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Cell type-specific transcriptomics in the brain

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

EDGE: extraction and analysis of differential gene expression.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Microarray analysis of gene expression during early adipocyte differentiation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Comparison of Microarray Preprocessing Methods

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Alternative splicing in disease and therapy

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

A regression-based method to identify differentially expressed genes in microarray time course studies and its application in an inducible Huntington's disease transgenic model

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Fast optimal leaf ordering for hierarchical clustering.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929947

Gene regulation: RNA methylation regulates the circadian clock

28 November 2018

1 reference

12 December 2020

[Clock genes and clock-controlled genes in mammals]

1 reference

12 December 2020

Splicing: waiting to be spliced

1 reference

12 December 2020

The timing of alpha-gustducin expression during cell renewal in rat vallate taste buds

1 reference

12 December 2020

Long-term survival following delayed presentation and resection of colorectal liver metastases

1 reference

12 December 2020

Influence of ischemic time on hyperacute xenograft rejection of pig hearts in a working heart perfusion model with human blood

1 reference

12 December 2020

release_7rlhgcuasjhdxfvbxbxio2n2hy

Identifiers

DOI

10.3389/FGENE.2014.00035

0 references

Fatcat ID

0 references

1 reference

PubMed publication ID

24600473

1 reference