Recognition of S-adenosylmethionine by riboswitches (Q27012766)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

review article

1 reference

title

Recognition of S-adenosylmethionine by riboswitches (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

author name string

Robert T. Batey

series ordinal

1

1 reference

language of work or name

1 reference

12 January 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

Wiley interdisciplinary reviews. RNA

13 February 2020

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

2

2 references

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13 February 2020

issue

2

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

299-311

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

Structural basis for recognition of S-adenosylhomocysteine by riboswitches

13 February 2020

cites work

1 reference

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Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

21 March 2017

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A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria

21 March 2017

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Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'

21 March 2017

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Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

21 March 2017

1 reference

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S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum

21 March 2017

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Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism

21 March 2017

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Crystal structure of the lysine riboswitch regulatory mRNA element

21 March 2017

1 reference

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Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling

21 March 2017

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The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

21 March 2017

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The distributions, mechanisms, and structures of metabolite-binding riboswitches

21 March 2017

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Ligand recognition determinants of guanine riboswitches

21 March 2017

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S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA

21 March 2017

1 reference

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Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

21 March 2017

1 reference

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Pseudoknots: RNA structures with diverse functions

21 March 2017

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Rfam: annotating non-coding RNAs in complete genomes

21 March 2017

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PSEUDOVIEWER2: Visualization of RNA pseudoknots of any type

21 March 2017

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The riboswitch-mediated control of sulfur metabolism in bacteria

21 March 2017

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Rfam: an RNA family database

21 March 2017

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A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria

21 March 2017

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RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

21 March 2017

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Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain

21 March 2017

1 reference

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Highly modular structure and ligand binding by conformational capture in a minimalistic riboswitch

21 March 2017

1 reference

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Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch

21 March 2017

1 reference

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Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA

21 March 2017

1 reference

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The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain

21 March 2017

1 reference

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Structural insights into amino acid binding and gene control by a lysine riboswitch

21 March 2017

1 reference

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Structure of the SAM-II riboswitch bound to S-adenosylmethionine

21 March 2017

1 reference

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The kink-turn: a new RNA secondary structure motif

21 March 2017

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The 1.3 A crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition

21 March 2017

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The structural basis for molecular recognition by the vitamin B 12 RNA aptamer

21 March 2017

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Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA

21 March 2017

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An mRNA structure that controls gene expression by binding S-adenosylmethionine

21 March 2017

1 reference

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Genetic control by a metabolite binding mRNA

21 March 2017

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The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs

21 March 2017

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A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes

21 March 2017

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The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria

21 March 2017

1 reference

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Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot

21 March 2017

1 reference

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Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

21 March 2017

1 reference

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Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

21 March 2017

1 reference

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The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase

21 March 2017

1 reference

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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

21 March 2017

1 reference

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An Allosteric Path to Transcription Termination

21 March 2017

1 reference

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The role of dynamic conformational ensembles in biomolecular recognition

7 April 2017

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X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

7 April 2017

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Structural characterization of flexible proteins using small-angle X-ray scattering

7 April 2017

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Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

7 April 2017

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RNA dynamics by design: biasing ensembles towards the ligand-bound state.

7 April 2017

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Improving small-angle X-ray scattering data for structural analyses of the RNA world

28 September 2017

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Bridging the solution divide: comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering

28 September 2017

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The ligand-free state of the TPP riboswitch: a partially folded RNA structure

28 September 2017

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A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

28 September 2017

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The structural and functional diversity of metabolite-binding riboswitches

28 September 2017

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Structural principles from large RNAs

28 September 2017

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Riboswitches: emerging themes in RNA structure and function

28 September 2017

1 reference

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Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine

28 September 2017

1 reference

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Ligand-dependent folding of the three-way junction in the purine riboswitch

28 September 2017

1 reference

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Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro

28 September 2017

1 reference

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Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism

28 September 2017

1 reference

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Structural studies of the purine and SAM binding riboswitches

28 September 2017

1 reference

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S-adenosylmethionine as an oxidant: the radical SAM superfamily

28 September 2017

1 reference

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Small-angle X-ray scattering from RNA, proteins, and protein complexes

28 September 2017

1 reference

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K-turn motifs in spatial RNA coding

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618691

Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618691

Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression

28 September 2017

1 reference

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Atomic level architecture of group I introns revealed

28 September 2017

1 reference

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Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function

28 September 2017

1 reference

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S-adenosylmethionine: nothing goes to waste

28 September 2017

1 reference

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Genetic control by metabolite-binding riboswitches

28 September 2017

1 reference

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Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.

28 September 2017

1 reference

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A universal mode of helix packing in RNA.

28 September 2017

1 reference

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Sulfur metabolism in Escherichia coli and related bacteria: facts and fiction.

28 September 2017

1 reference

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The mechanism of intrinsic transcription termination.

28 September 2017

1 reference

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RNA aptamers to the adenosine moiety of S-adenosyl methionine: structural inferences from variations on a theme and the reproducibility of SELEX.

28 September 2017

1 reference

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High-resolution molecular discrimination by RNA.

28 September 2017

1 reference

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Pharmacological and biochemical aspects of S-adenosylhomocysteine and S-adenosylhomocysteine hydrolase.

28 September 2017

1 reference

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Regulation of methionine synthesis in Escherichia coli

28 September 2017

1 reference

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Biological Methylation: Selected Aspects

28 September 2017

1 reference

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A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination

28 September 2017

1 reference

Molecular-recognition characteristics of SAM-binding riboswitches.

21 January 2018

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RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts

21 January 2018

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Topology of three-way junctions in folded RNAs

21 January 2018

1 reference

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

21 January 2018

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Visualizing spatially correlated dynamics that directs RNA conformational transitions

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/WRNA.63

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21957011%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

2 references