The prolyl isomerase domain of PpiD fromEscherichia colishows a parvulin fold but is devoid of catalytic activity (Q27658010)

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English	The prolyl isomerase domain of PpiD fromEscherichia colishows a parvulin fold but is devoid of catalytic activity	scientific article

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title

The prolyl isomerase domain of PpiD fromEscherichia colishows a parvulin fold but is devoid of catalytic activity (English)

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author

Ulrich Weininger

series ordinal

1

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Jochen Balbach

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Franz X. Schmid

series ordinal

5

object named as

Franz X Schmid

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Roman P Jakob

object named as

Roman P Jakob

series ordinal

2

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Michael Kovermann

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3

object named as

Michael Kovermann

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publication date

January 2010

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published in

Protein Science

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volume

19

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issue

1

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page(s)

6-18

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cites work

NMR solution structure of SlyD from Escherichia coli: spatial separation of prolyl isomerase and chaperone function

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20 March 2017

Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA – Implications for the catalytic mechanism of parvulins

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20 March 2017

The Periplasmic Bacterial Molecular Chaperone SurA Adapts its Structure to Bind Peptides in Different Conformations to Assert a Sequence Preference for Aromatic Residues

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20 March 2017

Structural analysis of the mitotic regulator hPin1 in solution: insights into domain architecture and substrate binding

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20 March 2017

Crystallographic structure of SurA, a molecular chaperone that facilitates folding of outer membrane porins

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20 March 2017

Solution structure of the single-domain prolyl cis/trans isomerase PIN1At from Arabidopsis thaliana

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20 March 2017

NMR solution structure of hPar14 reveals similarity to the peptidyl prolyl cis/trans isomerase domain of the mitotic regulator hPin1 but indicates a different functionality of the protein

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20 March 2017

Structural and functional analysis of the mitotic rotamase Pin1 suggests substrate recognition is phosphorylation dependent

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20 March 2017

The substrate-binding site in Escherichia coli cyclophilin A preferably recognizes a cis-proline isomer or a highly distorted form of the trans isomer

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20 March 2017

Using NMRView to visualize and analyze the NMR spectra of macromolecules

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20 March 2017

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

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20 March 2017

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

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20 March 2017

MOLMOL: a program for display and analysis of macromolecular structures

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20 March 2017

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

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20 March 2017

The SurA periplasmic PPIase lacking its parvulin domains functions in vivo and has chaperone activity

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PubMed Central

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20 March 2017

Determination of enzymatic catalysis for the cis-trans-isomerization of peptide binding in proline-containing peptides

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PubMed Central

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20 March 2017

SlyD proteins from different species exhibit high prolyl isomerase and chaperone activities

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PubMed Central

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20 March 2017

Intrinsic dynamics of an enzyme underlies catalysis

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PubMed Central

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7 April 2017

ARIA: automated NOE assignment and NMR structure calculation

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PubMed Central

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7 April 2017

Primary structure effects on peptide group hydrogen exchange

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PubMed Central

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7 April 2017

Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants

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PubMed Central

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7 April 2017

A library of fluorescent peptides for exploring the substrate specificities of prolyl isomerases

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PubMed Central

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29 September 2017

The disulfide bond formation (Dsb) system

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PubMed Central

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29 September 2017

Periplasmic peptidyl prolyl cis-trans isomerases are not essential for viability, but SurA is required for pilus biogenesis in Escherichia coli

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PubMed Central

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29 September 2017

Insights into the catalytic mechanism of peptidyl prolyl cis/trans isomerases

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PubMed Central

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29 September 2017

Membrane protein folding on the example of outer membrane protein A of Escherichia coli.

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PubMed Central

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29 September 2017

Enzyme dynamics during catalysis

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PubMed Central

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29 September 2017

Genetic evidence for parallel pathways of chaperone activity in the periplasm of Escherichia coli

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PubMed Central

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29 September 2017

Interaction of the periplasmic peptidylprolyl cis-trans isomerase SurA with model peptides. The N-terminal region of SurA id essential and sufficient for peptide binding

1 reference

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PubMed Central

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29 September 2017

The structural basis of protein targeting and translocation in bacteria.

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PubMed Central

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29 September 2017

Role of the Escherichia coli SurA protein in stationary-phase survival.

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PubMed Central

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29 September 2017

A new heat-shock gene, ppiD, encodes a peptidyl-prolyl isomerase required for folding of outer membrane proteins in Escherichia coli

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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29 September 2017

Catalysis of protein folding by parvulin

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PubMed Central

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29 September 2017

The Escherichia coli SlyD is a metal ion-regulated peptidyl-prolyl cis/trans-isomerase.

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PubMed Central

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29 September 2017

The CD4 determinant for downregulation by HIV-1 Nef directly binds to Nef. Mapping of the Nef binding surface by NMR.

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PubMed Central

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29 September 2017

SurA assists the folding of Escherichia coli outer membrane proteins

1 reference

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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29 September 2017

Mechanism of enzymatic and nonenzymatic prolyl cis-trans isomerization.

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PubMed Central

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29 September 2017

Prolyl isomerase: enzymatic catalysis of slow protein-folding reactions

1 reference

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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29 September 2017

Stability of protein structure and hydrophobic interaction.

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PubMed Central

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29 September 2017

surA, an Escherichia coli gene essential for survival in stationary phase

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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29 September 2017

Backbone and side-chain dynamics of residues in a partially folded beta-sheet peptide from platelet factor-4.

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PubMed Central

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2 June 2018

Stability and folding kinetics of ribonuclease T1 are strongly altered by the replacement of cis-proline 39 with alanine.

1 reference

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PubMed Central

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2 June 2018

Confirmation of the existence of a third family among peptidyl-prolyl cis/trans isomerases. Amino acid sequence and recombinant production of parvulin

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PubMed Central

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2 June 2018

Structural and functional characterization of Escherichia coli peptidyl-prolyl cis-trans isomerases.

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PubMed Central

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2 June 2018

Molecular determinants of a native-state prolyl isomerization

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

The dual histidine motif in the active site of Pin1 has a structural rather than catalytic role

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

The periplasmic peptidyl prolyl cis-trans isomerases PpiD and SurA have partially overlapping substrate specificities

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

The periplasmic chaperone PpiD interacts with secretory proteins exiting from the SecYEG translocon.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

Energetic coupling between native-state prolyl isomerization and conformational protein folding

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

Insertion of a chaperone domain converts FKBP12 into a powerful catalyst of protein folding.

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PubMed Central

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27 November 2018

Solution structure of Escherichia coli Par10: The prototypic member of the Parvulin family of peptidyl-prolyl cis/trans isomerases.

1 reference

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

Binding of phage-display-selected peptides to the periplasmic chaperone protein SurA mimics binding of unfolded outer membrane proteins

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

Probing slow time scale dynamics at methyl-containing side chains in proteins by relaxation dispersion NMR measurements: application to methionine residues in a cavity mutant of T4 lysozyme

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

High enzymatic activity and chaperone function are mechanistically related features of the dimeric E. coli peptidyl-prolyl-isomerase FkpA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

The periplasmic Escherichia coli peptidylprolyl cis,trans-isomerase FkpA. II. Isomerase-independent chaperone activity in vitro

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

SurA, a periplasmic protein with peptidyl-prolyl isomerase activity, participates in the assembly of outer membrane porins

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

A novel peptidyl-prolyl cis/trans isomerase from Escherichia coli.

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817834

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27 November 2018

Kinetic Analysis of Cyclophilin-Catalyzed Prolyl Cis/Trans Isomerization by Dynamic NMR Spectroscopy

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PubMed Central

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27 November 2018

Periplasmic chaperones--new structural and functional insights

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19866485

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mode of action of peptidyl prolyl cis/trans isomerases in vivo: binding vs. catalysis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19866485

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genetics of disulfide bond metabolism

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19866485

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR solution structure and characterization of substrate binding site of the PPIase domain of PrsA protein from Bacillus subtilis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19866485

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folding mechanism of ribonuclease T1 in the absence of the disulfide bonds

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19866485

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A TROSY CPMG sequence for characterizing chemical exchange in large proteins

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19866485

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1002/PRO.277

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4742643

OpenCitations bibliographic resource ID

4742643

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4742643

PMC publication ID

2817834

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4742643

PubMed publication ID

19866485

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4742643

ResearchGate publication ID

38045016

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