Preformed Protein-binding Motifs in 7SK snRNA: Structural and Thermodynamic Comparisons with Retroviral TAR (Q27664269)

https://api.crossref.org/works/10.1016/J.JMB.2010.08.042

6 July 2024

author name string

Michael A. Durney

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20816986

6 July 2024

Victoria M. D'Souza

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20816986

6 July 2024

language of work or name

English

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publication date

10 December 2010

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15 September 2010

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20816986

full work available at URL

6 July 2024

https://dash.harvard.edu/bitstream/1/9282599/1/preformed_protein_binding.pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20816986

https://api.elsevier.com/content/article/PII:S0022283610009204?httpAccept=text/xml

6 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.08.042

https://api.elsevier.com/content/article/PII:S0022283610009204?httpAccept=text/plain

6 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.08.042

Journal of Molecular Biology

6 July 2024

published in

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volume

404

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issue

4

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page(s)

555-67

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cites work

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Controlling the elongation phase of transcription with P-TEFb

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Small molecular weight monodisperse nuclear RNA

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Small RNA species of the HeLa cell: metabolism and subcellular localization

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7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes

6 July 2024

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The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription

6 July 2024

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Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitor

6 July 2024

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Inhibition of P-TEFb (CDK9/Cyclin T) kinase and RNA polymerase II transcription by the coordinated actions of HEXIM1 and 7SK snRNA

6 July 2024

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Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription.

6 July 2024

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Crystal structure of HIV-1 Tat complexed with human P-TEFb

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HIV-1 Tat and host AFF4 recruit two transcription elongation factors into a bifunctional complex for coordinated activation of HIV-1 transcription

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HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP

6 July 2024

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Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR.

6 July 2024

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TAR RNA loop: a scaffold for the assembly of a regulatory switch in HIV replication

6 July 2024

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HIV-1 TAR RNA enhances the interaction between Tat and cyclin T1.

6 July 2024

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Arginine-mediated RNA recognition: the arginine fork.

6 July 2024

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Specific binding of arginine to TAR RNA

6 July 2024

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Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge

6 July 2024

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Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

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Role of RNA structure in arginine recognition of TAR RNA

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Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization

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Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function

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Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding

6 July 2024

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Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme

6 July 2024

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Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4

6 July 2024

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Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product

6 July 2024

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Induced fit in RNA-protein recognition

6 July 2024

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6 July 2024

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Torsion angle dynamics for NMR structure calculation with the new program DYANA

6 July 2024

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6 July 2024

Identifiers

release_jxrpi5gkmvgcbhrlhvrvhur6ba

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Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/jxrpi5gkmvgcbhrlhvrvhur6ba

mapped directly with Wikidata item

24 November 2022

based on heuristic