Structural insights into initial and intermediate steps of the ribosome-recycling process (Q27677822)

22 June 2017

title

Structural insights into initial and intermediate steps of the ribosome-recycling process (English)

1 reference

22 June 2017

Takeshi Yokoyama

1

1 reference

22 June 2017

Tanvir R Shaikh

2

1 reference

22 June 2017

Nobuhiro Iwakura

3

1 reference

22 June 2017

Hideko Kaji

4

1 reference

22 June 2017

Akira Kaji

5

1 reference

22 June 2017

Rajendra K Agrawal

6

1 reference

22 June 2017

language of work or name

English

0 references

publication date

2 March 2012

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22 June 2017

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22 June 2017

volume

31

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22 June 2017

issue

7

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22 June 2017

page(s)

1836-1846

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Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

22 June 2017

cites work

1 reference

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Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

20 March 2017

1 reference

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The Structure of the Ribosome with Elongation Factor G Trapped in the Posttranslocational State

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

EF-G2mt is an exclusive recycling factor in mammalian mitochondrial protein synthesis

20 March 2017

1 reference

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GTPase activation of elongation factor EF-Tu by the ribosome during decoding

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Specific Interaction between EF-G and RRF and Its Implication for GTP-Dependent Ribosome Splitting into Subunits

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Structural basis for aminoglycoside inhibition of bacterial ribosome recycling

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Crystal structure of the ribosome recycling factor bound to the ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications

20 March 2017

1 reference

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Locking and unlocking of ribosomal motions

20 March 2017

1 reference

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Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium

20 March 2017

1 reference

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Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Solution structure of the ribosome recycling factor from Aquifex aeolicus

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Crystal structure of the ribosome at 5.5 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Crystal structure of the ribosome recycling factor from Escherichia coli

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Structures of the bacterial ribosome at 3.5 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

UCSF Chimera--a visualization system for exploratory research and analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

The ribosome-recycling step: consensus or controversy?

20 March 2017

1 reference

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Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

20 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

A ratchet-like inter-subunit reorganization of the ribosome during translocation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Navigating the ribosome's metastable energy landscape

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Structural Insights into ribosome recycling factor interactions with the 70S ribosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Preparation of macromolecular complexes for cryo-electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Messenger RNA conformations in the ribosomal E site revealed by X-ray crystallography.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Intersubunit movement is required for ribosomal translocation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Structural basis for messenger RNA movement on the ribosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Mechanism of recycling of post-termination ribosomal complexes in eubacteria: a new role of initiation factor 3.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Interaction of RRF and EF-G from E. coli and T. thermophilus with ribosomes from both origins--insight into the mechanism of the ribosome recycling step

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

X-ray structural studies of Mycobacterium tuberculosis RRF and a comparative study of RRFs of known structure. Molecular plasticity and biological implications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Post-termination complex disassembly by ribosome recycling factor, a functional tRNA mimic

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Three-dimensional cryoelectron microscopy of ribosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Interaction of the G' domain of elongation factor G and the C-terminal domain of ribosomal protein L7/L12 during translocation as revealed by cryo-EM.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

The role of ribosome recycling factor in dissociation of 70S ribosomes into subunits.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Fitting atomic models into electron-microscopy maps

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

EF-G-catalyzed translocation of anticodon stem-loop analogs of transfer RNA in the ribosome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Intermediate states in the movement of transfer RNA in the ribosome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321202

Deletion of a conserved, central ribosomal intersubunit RNA bridge

2 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2012.22

Domain II plays a crucial role in the function of ribosome recycling factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2012.22

Release of ribosome-bound ribosome recycling factor by elongation factor G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2012.22

Sequence of steps in ribosome recycling as defined by kinetic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2012.22

Distinct functions of elongation factor G in ribosome recycling and translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2012.22

Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2012.22

A bacterial elongation factor G homologue exclusively functions in ribosome recycling in the spirochaete Borrelia burgdorferi

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2012.22

Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22388519

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Novel roles for classical factors at the interface between translation termination and initiation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22388519

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/EMBOJ.2012.22

1 reference

OpenCitations bibliographic resource ID

22 June 2017

1149034

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1149034

1 reference