Experimental evidence for the thermophilicity of ancestral life (Q27678677)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23776221%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

title

Experimental evidence for the thermophilicity of ancestral life (English)

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3 March 2020

3

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3 March 2020

Ken-ichi Miyazono

7

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3 March 2020

Akihiko Yamagishi

9

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3 March 2020

8

Masaru Tanokura

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3 March 2020

author name string

Satoshi Akanuma

1

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3 March 2020

Yoshiki Nakajima

2

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3 March 2020

Mitsuo Kimura

4

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3 March 2020

Naoki Nemoto

5

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3 March 2020

Tomoko Mase

6

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3 March 2020

language of work or name

English

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publication date

17 June 2013

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

3 March 2020

published in

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3 March 2020

volume

110

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3 March 2020

issue

27

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3 March 2020

page(s)

11067-11072

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An epistatic ratchet constrains the direction of glucocorticoid receptor evolution

3 March 2020

cites work

1 reference

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Crystal structure of an ancient protein: evolution by conformational epistasis

20 March 2017

1 reference

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Assessing the accuracy of ancestral protein reconstruction methods

20 March 2017

1 reference

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The origin and evolution of Archaea: a state of the art

20 March 2017

1 reference

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GASP: Gapped Ancestral Sequence Prediction for proteins

20 March 2017

1 reference

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RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

20 March 2017

1 reference

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

20 March 2017

1 reference

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Determining divergence times with a protein clock: update and reevaluation

20 March 2017

1 reference

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Thermal stability of hexameric and tetrameric nucleoside diphosphate kinases. Effect of subunit interaction

20 March 2017

1 reference

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20 March 2017

1 reference

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

PAML: a program package for phylogenetic analysis by maximum likelihood

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

How to measure and predict the molar absorption coefficient of a protein

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Calculation of protein extinction coefficients from amino acid sequence data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Resurrecting ancestral alcohol dehydrogenases from yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

A new method of inference of ancestral nucleotide and amino acid sequences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Single-molecule paleoenzymology probes the chemistry of resurrected enzymes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Robustness of Ancestral Sequence Reconstruction to Phylogenetic Uncertainty

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Evolution of increased complexity in a molecular machine

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Stabilizing proteins from sequence statistics: the interplay of conservation and correlation in triosephosphate isomerase stability

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Deep phylogeny--how a tree can help characterize early life on Earth.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Potential role of phenotypic mutations in the evolution of protein expression and stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Parallel adaptations to high temperatures in the Archaean eon.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

A site- and time-heterogeneous model of amino acid replacement.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Evolution of hormone-receptor complexity by molecular exploitation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Resurrecting ancient genes: experimental analysis of extinct molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Inferring the palaeoenvironment of ancient bacteria on the basis of resurrected proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Semirational design of active tumor suppressor p53 DNA binding domain with enhanced stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703998

Origin of life-facing up to the physical setting

29 September 2017

1 reference

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A nonhyperthermophilic common ancestor to extant life forms

29 September 2017

1 reference

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Episodic adaptive evolution of primate lysozymes

2 June 2018

1 reference

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The universal ancestor lived in a thermophilic or hyperthermophilic environment

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

Protein disulfide oxidoreductases and the evolution of thermophily: was the last common ancestor a heat-loving microbe?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

Palaeotemperature trend for Precambrian life inferred from resurrected proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

Consensus-based engineering of protein stability: from intrabodies to thermostable enzymes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

Phylogeny-based design of a B-subunit of DNA gyrase and its ATPase domain using a small set of homologous amino acid sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

Computational and experimental evidence for the evolution of a (beta alpha)8-barrel protein from an ancestral quarter-barrel stabilised by disulfide bonds

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1308215110

21 January 2018

1 reference

18 October 2022

https://opencitations.net/index/coci/api/v1/citations/10.1128/MR.51.2.221-271.1987

Identifiers

DOI

10.1073/PNAS.1308215110

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23776221%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

ADS bibcode

2013PNAS..11011067A

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23776221%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

23776221

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23776221%20AND%20SRC:MED&resulttype=core&format=json