Thermal adaptation of conformational dynamics in ribonuclease H (Q28534069)

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English	Thermal adaptation of conformational dynamics in ribonuclease H	scientific article (publication date: 2013)

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scholarly article

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title

Thermal adaptation of conformational dynamics in ribonuclease H (English)

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author

Kate A Stafford

object named as

Kate A Stafford

series ordinal

1

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author name string

Paul Robustelli

series ordinal

2

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Arthur G Palmer

series ordinal

3

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language of work or name

English

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publication date

2013

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published in

PLOS Computational Biology

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volume

9

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issue

10

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page(s)

e1003218

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copyright license

Creative Commons Attribution 4.0 International

start time

3 October 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis

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Structure, Stability, and Folding of Ribonuclease H1 from the Moderately Thermophilic Chlorobium tepidum : Comparison with Thermophilic and Mesophilic Homologues

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Intrinsic motions along an enzymatic reaction trajectory

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Structure of human RNase H1 complexed with an RNA/DNA hybrid: insight into HIV reverse transcription

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Structural and thermodynamic analyses of Escherichia coli RNase HI variant with quintuple thermostabilizing mutations

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Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

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19 March 2017

Crystal structure of ribonuclease H from Thermus thermophilus HB8 refined at 2.8 A resolution

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Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolution

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Atomic-Level Characterization of the Structural Dynamics of Proteins

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7 April 2017

A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

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7 April 2017

Coupling between catalytic loop motions and enzyme global dynamics

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H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations

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29 September 2017

Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis.

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29 September 2017

Microsecond time-scale conformational exchange in proteins: using long molecular dynamics trajectory to simulate NMR relaxation dispersion data

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29 September 2017

Dynamics and dissipation in enzyme catalysis

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29 September 2017

Comparative hydrogen-deuterium exchange for a mesophilic vs thermophilic dihydrofolate reductase at 25 °C: identification of a single active site region with enhanced flexibility in the mesophilic protein

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29 September 2017

Catalysis by dihydrofolate reductase and other enzymes arises from electrostatic preorganization, not conformational motions

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29 September 2017

In silico elucidation of the recognition dynamics of ubiquitin

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29 September 2017

Identification of residual structure in the unfolded state of ribonuclease H1 from the moderately thermophilic Chlorobium tepidum: comparison with thermophilic and mesophilic homologues

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29 September 2017

Enzyme millisecond conformational dynamics do not catalyze the chemical step

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29 September 2017

Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes

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29 September 2017

Small- and large-scale conformational changes of adenylate kinase: a molecular dynamics study of the subdomain motion and mechanics

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29 September 2017

Illuminating the mechanistic roles of enzyme conformational dynamics

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29 September 2017

Structural analysis of protein dynamics by MD simulations and NMR spin-relaxation

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29 September 2017

An inserted Gly residue fine tunes dynamics between mesophilic and thermophilic ribonucleases H

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29 September 2017

An NMR perspective on enzyme dynamics

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29 September 2017

Cold-adapted enzymes.

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29 September 2017

Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state

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29 September 2017

Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins

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29 September 2017

Substitution of a highly basic helix/loop sequence into the RNase H domain of human immunodeficiency virus reverse transcriptase restores its Mn(2+)-dependent RNase H activity

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29 September 2017

Construction of an enzymatically active ribonuclease H domain of human immunodeficiency virus type 1 reverse transcriptase

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29 September 2017

Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase

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29 September 2017

A 500 ps molecular dynamics simulation study of interleukin-1 beta in water. Correlation with nuclear magnetic resonance spectroscopy and crystallography.

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29 September 2017

Interpreting protein structural dynamics from NMR chemical shifts

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2 June 2018

Conservation of mus-ms enzyme motions in the apo- and substrate-mimicked state

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2 June 2018

Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

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2 June 2018

Importance of the positive charge cluster in Escherichia coli ribonuclease HI for the effective binding of the substrate.

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2 June 2018

Thermostabilization of Escherichia coli ribonuclease HI by replacing left-handed helical Lys95 with Gly or Asn

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2 June 2018

Expression, purification, and characterization of a recombinant ribonuclease H from Thermus thermophilus HB8

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2 June 2018

Assignments of backbone proton, carbon-13, and nitrogen-15 resonances and secondary structure of ribonuclease H from Escherichia coli by heteronuclear three-dimensional NMR spectroscopy

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20 June 2018

Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair

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21 January 2018

Tunneling and coupled motion in the Escherichia coli dihydrofolate reductase catalysis

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21 January 2018

The stability of proteins in extreme environments

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21 January 2018

Hydrophobic environment is a key factor for the stability of thermophilic proteins

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21 January 2018

Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases

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21 January 2018

Comparison of the folding processes of T. thermophilus and E. coli ribonucleases H.

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21 January 2018

Remarkable stabilization of a psychrotrophic RNase HI by a combination of thermostabilizing mutations identified by the suppressor mutation method

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21 January 2018

The putative substrate recognition loop of Escherichia coli ribonuclease H is not essential for activity

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21 January 2018

Multiple time scale backbone dynamics of homologous thermophilic and mesophilic ribonuclease HI enzymes

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21 January 2018

InterPro in 2011: new developments in the family and domain prediction database

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Crossref

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003218

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21 January 2018

Solution NMR and computer simulation studies of active site loop motion in triosephosphate isomerase

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https://pubmed.ncbi.nlm.nih.gov/24098095

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12 December 2020

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Identifiers

DOI

10.1371/JOURNAL.PCBI.1003218

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DBLP publication ID

journals/ploscb/StaffordRP13

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stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PMC publication ID

3789780

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PubMed publication ID

24098095

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ResearchGate publication ID

257464657

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