28-way vertebrate alignment and conservation track in the UCSC Genome Browser (Q28756596)

12

0 references

Adam C. Siepel

24

0 references

Ross Hardison

3

0 references

Kerstin Lindblad-Toh

21

Kerstin Lindblad-Toh

0 references

Eric Lander

23

Eric S Lander

0 references

Daniel Blankenberg

Daniel Blankenberg

10

0 references

George Weinstock

George M Weinstock

20

0 references

Mark Diekhans

16

Mark Diekhans

0 references

Robert Baertsch

9

Robert Baertsch

0 references

Webb Miller

1

Webb Miller

0 references

Arthur M. Lesk

Arthur Lesk

Sergei L. Kosakovsky Pond

19

0 references

11

Sergei L Kosakovsky Pond

0 references

Kate R. Rosenbloom

2

Kate Rosenbloom

0 references

Jim Kent

26

W James Kent

0 references

James Taylor

5

James Taylor

0 references

Belinda M Giardine

13

Belinda Giardine

0 references

Richard Burhans

7

Richard Burhans

0 references

Svitlana Tyekucheva

15

Svitlana Tyekucheva

0 references

Brian J Raney

6

Brian Raney

0 references

William J Murphy

18

William J Murphy

0 references

Richard A Gibbs

22

Richard A Gibbs

0 references

author name string

Minmei Hou

4

0 references

David C King

8

0 references

Robert S Harris

14

0 references

Thomas H Pringle

Cretaceous eutherians and Laurasian origin for placental mammals near the K/T boundary

17

0 references

language of work or name

English

0 references

publication date

December 2007

0 references

published in

Genome Research

0 references

volume

17

0 references

issue

12

0 references

page(s)

1797-808

0 references

cites work

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

16 March 2017

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A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

16 March 2017

1 reference

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Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

16 March 2017

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Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

16 March 2017

1 reference

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

16 March 2017

1 reference

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Using genomic data to unravel the root of the placental mammal phylogeny

16 March 2017

1 reference

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16 March 2017

1 reference

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GENCODE: producing a reference annotation for ENCODE

16 March 2017

1 reference

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Predicting the effects of amino acid substitutions on protein function

16 March 2017

1 reference

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Identification and classification of conserved RNA secondary structures in the human genome

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

16 March 2017

1 reference

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An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing

16 March 2017

1 reference

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A model of the statistical power of comparative genome sequence analysis

16 March 2017

1 reference

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Highly conserved non-coding sequences are associated with vertebrate development

16 March 2017

1 reference

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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

16 March 2017

1 reference

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Finishing the euchromatic sequence of the human genome

16 March 2017

1 reference

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Ultraconserved Elements in the Human Genome

16 March 2017

1 reference

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Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

16 March 2017

1 reference

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Human-mouse alignments with BLASTZ

16 March 2017

1 reference

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The human genome browser at UCSC

16 March 2017

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

16 March 2017

1 reference

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A Hidden Markov Model approach to variation among sites in rate of evolution

16 March 2017

1 reference

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The rate of molecular evolution considered from the standpoint of population genetics

16 March 2017

1 reference

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Genomic mapping by fingerprinting random clones: a mathematical analysis

16 March 2017

1 reference

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Galaxy: a platform for interactive large-scale genome analysis

16 March 2017

1 reference

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Aligning multiple genomic sequences with the threaded blockset aligner

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

RefSeq and LocusLink: NCBI gene-centered resources

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

The UCSC Table Browser data retrieval tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Measuring the accuracy of genome-size multiple alignments

7 April 2017

1 reference

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Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data

3 June 2018

1 reference

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Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

PhenCode: connecting ENCODE data with mutations and phenotype

3 June 2018

1 reference

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Multiple sequence alignment: in pursuit of homologous DNA positions

3 June 2018

1 reference

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Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome

3 June 2018

1 reference

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ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements

3 June 2018

1 reference

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Evolutionary turnover of mammalian transcription start sites

3 June 2018

1 reference

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Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

PAHdb 2003: what a locus-specific knowledgebase can do.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Distinguishing regulatory DNA from neutral sites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Conserved noncoding sequences are reliable guides to regulatory elements.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

A space-time process model for the evolution of DNA sequences.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Two mutations within the coding sequence of the phenylalanine hydroxylase gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Exact and heuristic algorithms for the Indel Maximum Likelihood Problem.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Using multiple alignments to improve gene prediction.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Differences in the chromatin structure and cis-element organization of the human and mouse GATA1 loci: implications for cis-element identification

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Sequence gaps join mice and men: phylogenetic evidence from deletions in two proteins.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099589

Polymorphic DNA haplotypes at the phenylalanine hydroxylase locus and their relation to phenotype in Swedish phenylketonuria families

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17984227

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.6761107

1 reference

1 reference

1 reference

PubMed publication ID

17984227

1 reference