Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs (Q29614329)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

title

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs (English)

2 references

PubMed

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

0 references

0 references

corrigendum / erratum

Erratum: Corrigendum: Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

1 reference

12 July 2019

http://api.crossref.org/works?select=update-to&filter=doi:10.1038/NBT0710-756B

author

Joshua Levin

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Magdalena J Koziol

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

John L. Rinn

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

12

Eric S Lander

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

2

Manuel Garber

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1

Mitchell Guttman

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

13

Aviv Regev

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

9

Andreas Gnirke

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

author name string

Julie Donaghey

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

James Robinson

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Xian Adiconis

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Lin Fan

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Chad Nusbaum

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

1 February 2020

language of work or name

1 reference

30 April 2017

publication date

2 May 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

volume

28

2 references

PubMed

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

issue

5

2 references

PubMed

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

page(s)

503-510

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing

1 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Integrative analysis of the melanoma transcriptome

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

TopHat: discovering splice junctions with RNA-Seq

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Transcriptome sequencing to detect gene fusions in cancer

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Annotating genomes with massive-scale RNA sequencing

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Alternative isoform regulation in human tissue transcriptomes

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Stem cell transcriptome profiling via massive-scale mRNA sequencing

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Mapping and quantifying mammalian transcriptomes by RNA-Seq

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

RNA maps reveal new RNA classes and a possible function for pervasive transcription

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Antisense transcription in the mammalian transcriptome

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

The transcriptional landscape of the mammalian genome

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Niche-independent symmetrical self-renewal of a mammalian tissue stem cell

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Global identification of human transcribed sequences with genome tiling arrays

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

De novo transcriptome assembly with ABySS.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Identifying novel constrained elements by exploiting biased substitution patterns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868100

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

3 June 2018

Identifiers

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 February 2020

1025339324

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20436462%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20436462

1 February 2020

PubMed publication ID

3 references

30 April 2017