STAR: ultrafast universal RNA-seq aligner (Q29615052)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

STAR: ultrafast universal RNA-seq aligner (English)

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23104886

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

0 references

1 reference

7

1 reference

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16 February 2020

Thomas R. Gingeras

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1

Alexander Dobin

1 reference

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16 February 2020

8

Mark Chaisson

1 reference

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16 February 2020

author name string

Carrie A Davis

2

1 reference

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16 February 2020

Felix Schlesinger

3

1 reference

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16 February 2020

Jorg Drenkow

4

1 reference

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16 February 2020

Chris Zaleski

5

1 reference

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16 February 2020

Sonali Jha

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23104886

16 February 2020

language of work or name

1 reference

30 April 2017

publication date

25 October 2012

1 reference

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23104886

16 February 2020

number of pages

7

1 reference

based on heuristic

inferred from page(s)

2 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

volume

29

2 references

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30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

issue

1

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23104886

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

page(s)

15-21

2 references

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30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

16 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

GENCODE: the reference human genome annotation for The ENCODE Project

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Landscape of transcription in human cells

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

An integrated semiconductor device enabling non-optical genome sequencing

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

TopHat: discovering splice junctions with RNA-Seq

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Mauve: multiple alignment of conserved genomic sequence with rearrangements

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Versatile and open software for comparing large genomes

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Fast algorithms for large-scale genome alignment and comparison

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

BLAT—The BLAST-Like Alignment Tool

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Alignment of whole genomes

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Pre-mRNA splicing: where and when in the nucleus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Direct detection of DNA methylation during single-molecule, real-time sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Fast and SNP-tolerant detection of complex variants and splicing in short reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Transcriptome analysis by strand-specific sequencing of complementary DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Optimal spliced alignments of short sequence reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

Pre-mRNA splicing in the new millennium

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530905

10.1093/BIOINFORMATICS/BTS635

3 June 2018

Identifiers

DOI

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23104886

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/DobinDSDZJBCG13

16 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23104886

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23104886

16 February 2020

PubMed publication ID

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23104886%20AND%20SRC:MED&resulttype=core&format=json