The evolution of gene regulation by transcription factors and microRNAs (Q29617552)

Europe PubMed Central

title

The evolution of gene regulation by transcription factors and microRNAs (English)

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30 April 2017

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Chen K

1

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30 April 2017

Rajewsky N

series ordinal

2

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17230196

30 April 2017

language of work or name

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30 April 2017

publication date

February 2007

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30 April 2017

published in

Nature Reviews Genetics

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volume

8

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issue

2

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30 April 2017

page(s)

93-103

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Transcription regulation and animal diversity

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cites work

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From birth to death: the complex lives of eukaryotic mRNAs

31 March 2020

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The functions of animal microRNAs

31 March 2020

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MicroRNAs: genomics, biogenesis, mechanism, and function

31 March 2020

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Genomic sources of regulatory variation in cis and in trans

31 March 2020

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Gene regulatory networks and the evolution of animal body plans

31 March 2020

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Transcriptional regulators and the evolution of plant form.

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The diverse functions of microRNAs in animal development and disease

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The neuronal microRNA system

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Role of microRNAs in plant and animal development

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MicroRNAS and their regulatory roles in plants

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MicroRNA functions in animal development and human disease

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The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

31 March 2020

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The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

31 March 2020

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Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth

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Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

31 March 2020

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MicroRNAs regulate brain morphogenesis in zebrafish

31 March 2020

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Dicer is essential for mouse development

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DICER-LIKE1: blind men and elephants in Arabidopsis development

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MicroRNA expression in zebrafish embryonic development

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Differences in vertebrate microRNA expression

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Extensive post-transcriptional regulation of microRNAs and its implications for cancer

31 March 2020

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The small RNA profile during Drosophila melanogaster development

31 March 2020

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Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

31 March 2020

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Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development

31 March 2020

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Not miR-ly muscular: microRNAs and muscle development

31 March 2020

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Canalization of development by microRNAs

31 March 2020

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MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila

31 March 2020

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Denoising feedback loops by thresholding--a new role for microRNAs

31 March 2020

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Plants compared to animals: the broadest comparative study of development

31 March 2020

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Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes

31 March 2020

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Evolution of transcription factor function

31 March 2020

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Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA

31 March 2020

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Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: a role in life history evolution?

31 March 2020

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The expansion of the metazoan microRNA repertoire

31 March 2020

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The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint

31 March 2020

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Evidence for a microRNA expansion in the bilaterian ancestor

31 March 2020

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Genomic evolution of Hox gene clusters

31 March 2020

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

31 March 2020

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Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes

31 March 2020

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Revealing posttranscriptional regulatory elements through network-level conservation

31 March 2020

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MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant

31 March 2020

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Cloning and characterization of micro-RNAs from moss

31 March 2020

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Gene regulation: ancient microRNA target sequences in plants

31 March 2020

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Antiquity of microRNAs and their targets in land plants

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Transcription factor families have much higher expansion rates in plants than in animals.

31 March 2020

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

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Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

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Do disparate mechanisms of duplication add similar genes to the genome?

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Evolution of Arabidopsis microRNA families through duplication events

31 March 2020

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Evolution of microRNAs located within Hox gene clusters

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Molecular evolution of a microRNA cluster

31 March 2020

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Evolution of plant microRNA gene families

31 March 2020

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The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans

31 March 2020

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The mir-84 and let-7 paralogous microRNA genes of Caenorhabditis elegans direct the cessation of molting via the conserved nuclear hormone receptors NHR-23 and NHR-25

31 March 2020

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RAS is regulated by the let-7 microRNA family

31 March 2020

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Reciprocal expression of lin-41 and the microRNAs let-7 and mir-125 during mouse embryogenesis

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Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites

31 March 2020

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Temporally regulated expression of Lin-28 in diverse tissues of the developing mouse

31 March 2020

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microRNA target predictions across seven Drosophila species and comparison to mammalian targets

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Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques

31 March 2020

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Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

31 March 2020

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

31 March 2020

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Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites

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Conservation of regulatory elements between two species of Drosophila

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Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

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Large-scale turnover of functional transcription factor binding sites in Drosophila

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Evidence for stabilizing selection in a eukaryotic enhancer element.

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Functional evolution of a cis-regulatory module

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Silencing of microRNAs in vivo with 'antagomirs'

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Cell-type-specific signatures of microRNAs on target mRNA expression

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Natural selection on human microRNA binding sites inferred from SNP data

31 March 2020

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Abundant raw material for cis-regulatory evolution in humans

31 March 2020

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Sequence variants in SLITRK1 are associated with Tourette's syndrome

31 March 2020

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A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep

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Polymorphisms in human pre-miRNAs

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The evolution of transcriptional regulation in eukaryotes

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Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites

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Sequence turnover and tandem repeats in cis-regulatory modules in drosophila

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Rapid evolution of cis-regulatory sequences via local point mutations

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Adaptive evolution of transcription factor binding sites

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Expected rates and modes of evolution of enhancer sequences

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Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis

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Diversity of microRNAs in human and chimpanzee brain

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microRNA target predictions in animals

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Specific Effects of MicroRNAs on the Plant Transcriptome

31 March 2020

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Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana

31 March 2020

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Hairpin RNA: a secondary structure of primary importance

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Identification of hundreds of conserved and nonconserved human microRNAs

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Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs

31 March 2020

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

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Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes

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Relief of microRNA-mediated translational repression in human cells subjected to stress

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Synaptic protein synthesis associated with memory is regulated by the RISC pathway in Drosophila

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MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision

31 March 2020

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LIN-12/Notch activation leads to microRNA-mediated down-regulation of Vav in C. elegans

31 March 2020

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A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis

31 March 2020

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Evolution at two levels in humans and chimpanzees

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MicroRNA genes are transcribed by RNA polymerase II

31 March 2020

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The time of appearance of the C. elegans let-7 microRNA is transcriptionally controlled utilizing a temporal regulatory element in its promoter

31 March 2020

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Spatial regulation of microRNA gene expression in the Drosophila embryo.

31 March 2020

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Principles and effects of microRNA-mediated post-transcriptional gene regulation.

31 March 2020

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Approaches to microRNA discovery

31 March 2020

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Prediction and validation of microRNAs and their targets

31 March 2020

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Mfold web server for nucleic acid folding and hybridization prediction

31 March 2020

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Vienna RNA secondary structure server

31 March 2020

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Identification of virus-encoded microRNAs

31 March 2020

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Identification of novel genes coding for small expressed RNAs

31 March 2020

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Genome sequencing in microfabricated high-density picolitre reactors

31 March 2020

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Elucidation of the small RNA component of the transcriptome

31 March 2020

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Rfam: an RNA family database

31 March 2020

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Combinatorial microRNA target predictions

31 March 2020

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Prediction of mammalian microRNA targets

31 March 2020

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Principles of microRNA-target recognition

31 March 2020

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A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

31 March 2020

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A guide through present computational approaches for the identification of mammalian microRNA targets

31 March 2020

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Assessing computational tools for the discovery of transcription factor binding sites

31 March 2020

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Computational methods for transcriptional regulation

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Prediction of plant microRNA targets

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Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

31 March 2020

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Repression of protein synthesis by miRNAs: how many mechanisms?

31 March 2020

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A family of microRNAs present in plants and animals.

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17230196

31 March 2020

Identifiers

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30 April 2017

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

342387

Dimensions Publication ID

1025508802

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OpenCitations bibliographic resource ID

342387

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